RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 FRAT1Q92837 279 aaPredicted RBP18.92■□□□□ 0.62
SSBP3-201ENST00000326956 MYO5CQ9NQX4 1742 aa18.92■□□□□ 0.62
SSBP3-201ENST00000326956 BRPF3Q9ULD4 1205 aa18.91■□□□□ 0.62
SSBP3-201ENST00000326956 ZNF521Q96K83 1311 aa18.91■□□□□ 0.62
SSBP3-201ENST00000326956 EIF3AQ14152 1382 aaKnown RBP18.91■□□□□ 0.62
SSBP3-201ENST00000326956 APAF1O14727 1248 aa18.9■□□□□ 0.62
SSBP3-201ENST00000326956 CANXP27824 592 aaKnown RBP18.9■□□□□ 0.62
SSBP3-201ENST00000326956 WDR7Q9Y4E6 1490 aa18.9■□□□□ 0.62
SSBP3-201ENST00000326956 IQGAP3Q86VI3 1631 aa18.89■□□□□ 0.61
SSBP3-201ENST00000326956 MAST1Q9Y2H9 1570 aa18.88■□□□□ 0.61
SSBP3-201ENST00000326956 E9PSI1 815 aa18.88■□□□□ 0.61
SSBP3-201ENST00000326956 ATP10AO60312 1499 aa18.87■□□□□ 0.61
SSBP3-201ENST00000326956 DUOX2Q9NRD8 1548 aa18.87■□□□□ 0.61
SSBP3-201ENST00000326956 BCAR3O75815 825 aa18.87■□□□□ 0.61
SSBP3-201ENST00000326956 PIK3C2GO75747 1445 aa18.87■□□□□ 0.61
SSBP3-201ENST00000326956 ASXL1Q8IXJ9 1541 aa18.86■□□□□ 0.61
SSBP3-201ENST00000326956 FRAT2O75474 233 aaPredicted RBP18.86■□□□□ 0.61
SSBP3-201ENST00000326956 NKTRP30414 1462 aaKnown RBP18.86■□□□□ 0.61
SSBP3-201ENST00000326956 STAC3Q96MF2 364 aa18.84■□□□□ 0.61
SSBP3-201ENST00000326956 CGNL1Q0VF96 1302 aa18.84■□□□□ 0.61
SSBP3-201ENST00000326956 SCAF11Q99590 1463 aaKnown RBP18.84■□□□□ 0.61
SSBP3-201ENST00000326956 PLXNC1O60486 1568 aa18.83■□□□□ 0.6
SSBP3-201ENST00000326956 BECN1Q14457 450 aa18.83■□□□□ 0.6
SSBP3-201ENST00000326956 TRMT2AQ8IZ69 625 aaKnown RBP18.83■□□□□ 0.6
SSBP3-201ENST00000326956 NGEFQ8N5V2 710 aa18.82■□□□□ 0.6
SSBP3-201ENST00000326956 SPINK5Q9NQ38 1064 aaPredicted RBP18.82■□□□□ 0.6
SSBP3-201ENST00000326956 RNF17Q9BXT8 1623 aaKnown RBP18.82■□□□□ 0.6
SSBP3-201ENST00000326956 EFCAB2Q5VUJ9 269 aa18.82■□□□□ 0.6
SSBP3-201ENST00000326956 SYNMO15061 1565 aa18.82■□□□□ 0.6
SSBP3-201ENST00000326956 CLASP1Q7Z460 1538 aa18.81■□□□□ 0.6
SSBP3-201ENST00000326956 TTC37Q6PGP7 1564 aa18.81■□□□□ 0.6
SSBP3-201ENST00000326956 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.81■□□□□ 0.6
SSBP3-201ENST00000326956 NPC1L1Q9UHC9 1359 aa18.81■□□□□ 0.6
SSBP3-201ENST00000326956 CENPJQ9HC77 1338 aaPredicted RBP18.8■□□□□ 0.6
SSBP3-201ENST00000326956 MAPK8IP3Q9UPT6 1336 aa18.8■□□□□ 0.6
SSBP3-201ENST00000326956 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.8■□□□□ 0.6
SSBP3-201ENST00000326956 PDE3AQ14432 1141 aa18.8■□□□□ 0.6
SSBP3-201ENST00000326956 IGHDP01880 384 aa18.79■□□□□ 0.6
SSBP3-201ENST00000326956 CLUAP1Q96AJ1 413 aa18.79■□□□□ 0.6
SSBP3-201ENST00000326956 COG6Q9Y2V7 657 aa18.78■□□□□ 0.6
SSBP3-201ENST00000326956 UPF2Q9HAU5 1272 aaKnown RBP18.77■□□□□ 0.6
SSBP3-201ENST00000326956 ABCC2Q92887 1545 aa18.77■□□□□ 0.59
SSBP3-201ENST00000326956 MADDQ8WXG6 1647 aa18.76■□□□□ 0.59
SSBP3-201ENST00000326956 IQGAP1P46940 1657 aa18.76■□□□□ 0.59
SSBP3-201ENST00000326956 PANK1Q8TE04 598 aa18.76■□□□□ 0.59
SSBP3-201ENST00000326956 SPAG9O60271 1321 aaKnown RBP18.75■□□□□ 0.59
SSBP3-201ENST00000326956 SCAPERQ9BY12 1400 aa18.75■□□□□ 0.59
SSBP3-201ENST00000326956 NINLQ9Y2I6 1382 aa18.75■□□□□ 0.59
SSBP3-201ENST00000326956 NEUROD2Q15784 382 aa18.74■□□□□ 0.59
SSBP3-201ENST00000326956 SLKQ9H2G2 1235 aaPredicted RBP18.73■□□□□ 0.59
SSBP3-201ENST00000326956 DMRT2Q9Y5R5 561 aa18.73■□□□□ 0.59
SSBP3-201ENST00000326956 PMFBP1Q8TBY8 1022 aa18.72■□□□□ 0.59
SSBP3-201ENST00000326956 WWC1Q8IX03 1113 aa18.72■□□□□ 0.59
SSBP3-201ENST00000326956 KANK1Q14678 1352 aa18.71■□□□□ 0.59
SSBP3-201ENST00000326956 CFAP70Q5T0N1 1121 aa18.7■□□□□ 0.58
SSBP3-201ENST00000326956 PLCH2O75038 1416 aa18.7■□□□□ 0.58
SSBP3-201ENST00000326956 EIF5BO60841 1220 aaKnown RBP18.7■□□□□ 0.58
SSBP3-201ENST00000326956 KDM5AP29375 1690 aaKnown RBP18.69■□□□□ 0.58
SSBP3-201ENST00000326956 SEC24BO95487 1268 aa18.69■□□□□ 0.58
SSBP3-201ENST00000326956 MORC1Q86VD1 984 aa18.69■□□□□ 0.58
SSBP3-201ENST00000326956 TRPM2O94759 1503 aa18.68■□□□□ 0.58
SSBP3-201ENST00000326956 TNNT2P45379 298 aaPredicted RBP18.68■□□□□ 0.58
SSBP3-201ENST00000326956 USP19O94966 1318 aa18.68■□□□□ 0.58
SSBP3-201ENST00000326956 TRAPPC8Q9Y2L5 1435 aa18.68■□□□□ 0.58
SSBP3-201ENST00000326956 AAMPQ13685 434 aa18.67■□□□□ 0.58
SSBP3-201ENST00000326956 SPHKAPQ2M3C7 1700 aa18.67■□□□□ 0.58
SSBP3-201ENST00000326956 AFAP1Q8N556 730 aa18.67■□□□□ 0.58
SSBP3-201ENST00000326956 CARD14Q9BXL6 1004 aa18.67■□□□□ 0.58
SSBP3-201ENST00000326956 RRP7AQ9Y3A4 280 aaKnown RBP18.67■□□□□ 0.58
SSBP3-201ENST00000326956 RUNDC1Q96C34 613 aa18.66■□□□□ 0.58
SSBP3-201ENST00000326956 POGKQ9P215 609 aa18.65■□□□□ 0.58
SSBP3-201ENST00000326956 MYOM1P52179 1685 aa18.65■□□□□ 0.58
SSBP3-201ENST00000326956 PTPRTO14522 1441 aa18.65■□□□□ 0.58
SSBP3-201ENST00000326956 POLR3AO14802 1390 aaPredicted RBP18.65■□□□□ 0.58
SSBP3-201ENST00000326956 RARSP54136 660 aaKnown RBP18.64■□□□□ 0.58
SSBP3-201ENST00000326956 FAM43AQ8N2R8 423 aa18.64■□□□□ 0.58
SSBP3-201ENST00000326956 RWDD1Q9H446 243 aaPredicted RBP18.64■□□□□ 0.58
SSBP3-201ENST00000326956 KIF3BO15066 747 aa18.64■□□□□ 0.57
SSBP3-201ENST00000326956 L1TD1Q5T7N2 865 aaKnown RBP18.63■□□□□ 0.57
SSBP3-201ENST00000326956 CEP152O94986 1710 aa18.63■□□□□ 0.57
SSBP3-201ENST00000326956 TCP11L2Q8N4U5 519 aa18.63■□□□□ 0.57
SSBP3-201ENST00000326956 BCL2L13Q9BXK5 485 aa18.63■□□□□ 0.57
SSBP3-201ENST00000326956 CLTCL1P53675 1640 aa18.63■□□□□ 0.57
SSBP3-201ENST00000326956 CHD1O14646 1710 aa18.63■□□□□ 0.57
SSBP3-201ENST00000326956 CFAP53Q96M91 514 aa18.62■□□□□ 0.57
SSBP3-201ENST00000326956 ERVK-7P63135 1459 aa18.62■□□□□ 0.57
SSBP3-201ENST00000326956 PDZRN3Q9UPQ7 1066 aa18.62■□□□□ 0.57
SSBP3-201ENST00000326956 ADGRF5Q8IZF2 1346 aa18.61■□□□□ 0.57
SSBP3-201ENST00000326956 ABCC1P33527 1531 aa18.61■□□□□ 0.57
SSBP3-201ENST00000326956 CHGAP10645 457 aaKnown RBP18.6■□□□□ 0.57
SSBP3-201ENST00000326956 PCDHB15Q9Y5E8 787 aa18.6■□□□□ 0.57
SSBP3-201ENST00000326956 VIRMAQ69YN4 1812 aaKnown RBP18.6■□□□□ 0.57
SSBP3-201ENST00000326956 WDR63Q8IWG1 891 aa18.6■□□□□ 0.57
SSBP3-201ENST00000326956 RTEL1-TNFRSF6BF6WH68 1400 aa18.59■□□□□ 0.57
SSBP3-201ENST00000326956 FTSJ3Q8IY81 847 aaKnown RBP18.59■□□□□ 0.57
SSBP3-201ENST00000326956 TBC1D32Q96NH3 1257 aa18.59■□□□□ 0.57
SSBP3-201ENST00000326956 MYH16Q9H6N6 1097 aa18.59■□□□□ 0.57
SSBP3-201ENST00000326956 NSD3Q9BZ95 1437 aa18.58■□□□□ 0.56
SSBP3-201ENST00000326956 RSPH6AQ9H0K4 717 aa18.58■□□□□ 0.56
SSBP3-201ENST00000326956 RLBP1P12271 317 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms