RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 POLR3GLQ9BT43 218 aa25.67■■□□□ 1.7
USP39-201ENST00000323701 NRXN1Q9ULB1 1477 aa25.66■■□□□ 1.7
USP39-201ENST00000323701 ERVK-7P63135 1459 aa25.66■■□□□ 1.7
USP39-201ENST00000323701 PPLO60437 1756 aa25.65■■□□□ 1.7
USP39-201ENST00000323701 NUTM2DQ5VT03 806 aaPredicted RBP25.65■■□□□ 1.7
USP39-201ENST00000323701 ARID4BQ4LE39 1312 aaPredicted RBP25.64■■□□□ 1.7
USP39-201ENST00000323701 ANP32CO43423 234 aa25.64■■□□□ 1.7
USP39-201ENST00000323701 PELP1Q8IZL8 1130 aaKnown RBP25.64■■□□□ 1.7
USP39-201ENST00000323701 TESK2Q96S53 571 aa25.64■■□□□ 1.7
USP39-201ENST00000323701 SLC52A1Q9NWF4 448 aa25.63■■□□□ 1.69
USP39-201ENST00000323701 SCAF1Q9H7N4 1312 aaKnown RBP25.62■■□□□ 1.69
USP39-201ENST00000323701 MYO5BQ9ULV0 1848 aa25.61■■□□□ 1.69
USP39-201ENST00000323701 IQGAP1P46940 1657 aa25.61■■□□□ 1.69
USP39-201ENST00000323701 KIAA1210Q9ULL0 1709 aa25.6■■□□□ 1.69
USP39-201ENST00000323701 NEXMIFQ5QGS0 1516 aa25.59■■□□□ 1.69
USP39-201ENST00000323701 TMEM131LA2VDJ0 1609 aa25.59■■□□□ 1.69
USP39-201ENST00000323701 PIK3C2GO75747 1445 aa25.58■■□□□ 1.69
USP39-201ENST00000323701 RPGRIP1LQ68CZ1 1315 aa25.58■■□□□ 1.68
USP39-201ENST00000323701 DISP3Q9P2K9 1392 aa25.58■■□□□ 1.68
USP39-201ENST00000323701 ZMYM3Q14202 1370 aa25.57■■□□□ 1.68
USP39-201ENST00000323701 SPATA31D1Q6ZQQ2 1576 aa25.56■■□□□ 1.68
USP39-201ENST00000323701 SCAF11Q99590 1463 aaKnown RBP25.56■■□□□ 1.68
USP39-201ENST00000323701 SENP3Q9H4L4 574 aaPredicted RBP25.54■■□□□ 1.68
USP39-201ENST00000323701 ESF1Q9H501 851 aaKnown RBP25.52■■□□□ 1.68
USP39-201ENST00000323701 C14orf93Q9H972 538 aaKnown RBP25.52■■□□□ 1.68
USP39-201ENST00000323701 TMEM132EQ6IEE7 984 aa25.49■■□□□ 1.67
USP39-201ENST00000323701 CCER2I3L3R5 266 aa25.49■■□□□ 1.67
USP39-201ENST00000323701 VGFO15240 615 aaPredicted RBP25.48■■□□□ 1.67
USP39-201ENST00000323701 ADGRB1O14514 1584 aa25.48■■□□□ 1.67
USP39-201ENST00000323701 PRKRIP1Q9H875 184 aaPredicted RBP25.47■■□□□ 1.67
USP39-201ENST00000323701 SETBP1Q9Y6X0 1596 aa25.45■■□□□ 1.66
USP39-201ENST00000323701 A2ML1A8K2U0 1454 aa25.45■■□□□ 1.66
USP39-201ENST00000323701 TMF1P82094 1093 aa25.44■■□□□ 1.66
USP39-201ENST00000323701 CNGB1Q14028 1251 aaPredicted RBP25.44■■□□□ 1.66
USP39-201ENST00000323701 CEBPAP49715 358 aaPredicted RBP25.44■■□□□ 1.66
USP39-201ENST00000323701 STAG3Q9UJ98 1225 aa25.44■■□□□ 1.66
USP39-201ENST00000323701 ZFYVE9O95405 1425 aa25.43■■□□□ 1.66
USP39-201ENST00000323701 CCDC184Q52MB2 194 aa25.42■■□□□ 1.66
USP39-201ENST00000323701 CENPBP07199 599 aaPredicted RBP25.41■■□□□ 1.66
USP39-201ENST00000323701 TRAK1Q9UPV9 953 aa25.41■■□□□ 1.66
USP39-201ENST00000323701 EIF3AQ14152 1382 aaKnown RBP25.4■■□□□ 1.66
USP39-201ENST00000323701 TNRQ92752 1358 aa25.38■■□□□ 1.65
USP39-201ENST00000323701 ASXL1Q8IXJ9 1541 aa25.37■■□□□ 1.65
USP39-201ENST00000323701 RIMS2Q9UQ26 1411 aa25.34■■□□□ 1.65
USP39-201ENST00000323701 MYO3AQ8NEV4 1616 aa25.34■■□□□ 1.65
USP39-201ENST00000323701 PER1O15534 1290 aaPredicted RBP25.34■■□□□ 1.65
USP39-201ENST00000323701 PLPPR3Q6T4P5 718 aa25.34■■□□□ 1.65
USP39-201ENST00000323701 PANK3Q9H999 370 aa25.32■■□□□ 1.64
USP39-201ENST00000323701 CENPJQ9HC77 1338 aaPredicted RBP25.32■■□□□ 1.64
USP39-201ENST00000323701 FER1L4A9Z1Z3 1794 aa25.32■■□□□ 1.64
USP39-201ENST00000323701 C3P01024 1663 aa25.31■■□□□ 1.64
USP39-201ENST00000323701 ALKQ9UM73 1620 aa25.29■■□□□ 1.64
USP39-201ENST00000323701 STK26Q9P289 416 aa25.28■■□□□ 1.64
USP39-201ENST00000323701 ARHGEF28Q8N1W1 1705 aaKnown RBP25.27■■□□□ 1.64
USP39-201ENST00000323701 QRICH2Q9H0J4 1663 aa25.27■■□□□ 1.64
USP39-201ENST00000323701 UBR1Q8IWV7 1749 aa25.27■■□□□ 1.64
USP39-201ENST00000323701 SBNO2Q9Y2G9 1366 aa25.27■■□□□ 1.64
USP39-201ENST00000323701 MYOM1P52179 1685 aa25.26■■□□□ 1.63
USP39-201ENST00000323701 PTPRMP28827 1452 aa25.26■■□□□ 1.63
USP39-201ENST00000323701 CDCA8Q53HL2 280 aa25.23■■□□□ 1.63
USP39-201ENST00000323701 MRS2Q9HD23 443 aa25.23■■□□□ 1.63
USP39-201ENST00000323701 KDM5AP29375 1690 aaKnown RBP25.23■■□□□ 1.63
USP39-201ENST00000323701 SAFB2Q14151 953 aaKnown RBP eCLIP25.22■■□□□ 1.63
USP39-201ENST00000323701 NRXN3Q9Y4C0 1643 aa25.22■■□□□ 1.63
USP39-201ENST00000323701 YTHDC2Q9H6S0 1430 aaKnown RBP25.22■■□□□ 1.63
USP39-201ENST00000323701 TMEM2Q9UHN6 1383 aa25.21■■□□□ 1.63
USP39-201ENST00000323701 SETD1AO15047 1707 aaKnown RBP25.21■■□□□ 1.63
USP39-201ENST00000323701 NLRP1Q9C000 1473 aa25.19■■□□□ 1.62
USP39-201ENST00000323701 CC2D1BQ5T0F9 858 aaKnown RBP25.18■■□□□ 1.62
USP39-201ENST00000323701 LTKP29376 864 aa25.17■■□□□ 1.62
USP39-201ENST00000323701 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.17■■□□□ 1.62
USP39-201ENST00000323701 TULP4Q9NRJ4 1543 aa25.16■■□□□ 1.62
USP39-201ENST00000323701 PARD3Q8TEW0 1356 aa25.16■■□□□ 1.62
USP39-201ENST00000323701 METP08581 1390 aa25.15■■□□□ 1.62
USP39-201ENST00000323701 SLC24A1O60721 1099 aa25.15■■□□□ 1.62
USP39-201ENST00000323701 PRAM1Q96QH2 718 aa25.15■■□□□ 1.62
USP39-201ENST00000323701 RIMS1Q86UR5 1692 aaKnown RBP25.14■■□□□ 1.62
USP39-201ENST00000323701 FAM9BQ8IZU0 186 aa25.14■■□□□ 1.62
USP39-201ENST00000323701 KTN1Q86UP2 1357 aaKnown RBP25.14■■□□□ 1.62
USP39-201ENST00000323701 RALBP1Q15311 655 aa25.13■■□□□ 1.61
USP39-201ENST00000323701 CARD14Q9BXL6 1004 aa25.11■■□□□ 1.61
USP39-201ENST00000323701 MYBBP1AQ9BQG0 1328 aaKnown RBP25.11■■□□□ 1.61
USP39-201ENST00000323701 AMER1Q5JTC6 1135 aaPredicted RBP25.11■■□□□ 1.61
USP39-201ENST00000323701 GTF3C3Q9Y5Q9 886 aa25.11■■□□□ 1.61
USP39-201ENST00000323701 MINK1Q8N4C8 1332 aaPredicted RBP25.1■■□□□ 1.61
USP39-201ENST00000323701 SLC12A5Q9H2X9 1139 aa25.1■■□□□ 1.61
USP39-201ENST00000323701 ADAMTSL3P82987 1691 aa25.09■■□□□ 1.61
USP39-201ENST00000323701 WAPLQ7Z5K2 1190 aa25.09■■□□□ 1.61
USP39-201ENST00000323701 CABP2Q9NPB3 220 aa25.09■■□□□ 1.61
USP39-201ENST00000323701 KNSTRNQ9Y448 316 aa25.09■■□□□ 1.61
USP39-201ENST00000323701 LRPPRCP42704 1394 aaKnown RBP25.09■■□□□ 1.61
USP39-201ENST00000323701 PLEKHH1Q9ULM0 1364 aa25.09■■□□□ 1.61
USP39-201ENST00000323701 HDGFP51858 240 aaKnown RBP25.08■■□□□ 1.61
USP39-201ENST00000323701 POGKQ9P215 609 aa25.08■■□□□ 1.61
USP39-201ENST00000323701 EVC2Q86UK5 1308 aa25.07■■□□□ 1.6
USP39-201ENST00000323701 TXNDC2Q86VQ3 553 aa25.07■■□□□ 1.6
USP39-201ENST00000323701 BCANQ96GW7 911 aa25.07■■□□□ 1.6
USP39-201ENST00000323701 ADAMTS13Q76LX8 1427 aa25.07■■□□□ 1.6
USP39-201ENST00000323701 HNRNPUQ00839 825 aaKnown RBP eCLIP25.06■■□□□ 1.6
USP39-201ENST00000323701 TMC1Q8TDI8 760 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms