RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.5□□□□□ -0.418e-7■■■□□ 18.7
PTPRA-202ENST00000318266 BCAR3O75815 825 aa12.5□□□□□ -0.41
PTPRA-202ENST00000318266 RRAGDQ9NQL2 400 aaPredicted RBP12.5□□□□□ -0.41
PTPRA-202ENST00000318266 GOLGA2Q08379 1002 aa12.49□□□□□ -0.41
PTPRA-202ENST00000318266 NUP153P49790 1475 aaKnown RBP12.49□□□□□ -0.41
PTPRA-202ENST00000318266 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.49□□□□□ -0.41
PTPRA-202ENST00000318266 FANCAO15360 1455 aa12.49□□□□□ -0.41
PTPRA-202ENST00000318266 TTC37Q6PGP7 1564 aa12.48□□□□□ -0.41
PTPRA-202ENST00000318266 GZF1Q9H116 711 aaPredicted RBP12.48□□□□□ -0.41
PTPRA-202ENST00000318266 BLMP54132 1417 aaPredicted RBP12.48□□□□□ -0.41
PTPRA-202ENST00000318266 IGHDP01880 384 aa12.48□□□□□ -0.41
PTPRA-202ENST00000318266 TSPY4P0CV99 314 aa12.48□□□□□ -0.41
PTPRA-202ENST00000318266 TSPY10P0CW01 314 aa12.48□□□□□ -0.41
PTPRA-202ENST00000318266 LMTK3Q96Q04 1460 aa12.47□□□□□ -0.41
PTPRA-202ENST00000318266 FRMPD1Q5SYB0 1578 aa12.47□□□□□ -0.41
PTPRA-202ENST00000318266 HNRNPMP52272 730 aaKnown RBP eCLIP12.47□□□□□ -0.414e-7■■■■■ 28.7
PTPRA-202ENST00000318266 SPINK5Q9NQ38 1064 aaPredicted RBP12.47□□□□□ -0.41
PTPRA-202ENST00000318266 RICTORQ6R327 1708 aa12.46□□□□□ -0.41
PTPRA-202ENST00000318266 MADDQ8WXG6 1647 aa12.46□□□□□ -0.41
PTPRA-202ENST00000318266 TESK2Q96S53 571 aa12.46□□□□□ -0.42
PTPRA-202ENST00000318266 PREX1Q8TCU6 1659 aa12.46□□□□□ -0.42
PTPRA-202ENST00000318266 GPATCH8Q9UKJ3 1502 aaKnown RBP12.45□□□□□ -0.42
PTPRA-202ENST00000318266 CANXP27824 592 aaKnown RBP12.45□□□□□ -0.42
PTPRA-202ENST00000318266 KNSTRNQ9Y448 316 aa12.45□□□□□ -0.42
PTPRA-202ENST00000318266 USP19O94966 1318 aa12.44□□□□□ -0.42
PTPRA-202ENST00000318266 PPP2R1AP30153 589 aa12.44□□□□□ -0.42
PTPRA-202ENST00000318266 TMF1P82094 1093 aa12.44□□□□□ -0.42
PTPRA-202ENST00000318266 NAP1L5Q96NT1 182 aaPredicted RBP12.44□□□□□ -0.42
PTPRA-202ENST00000318266 APAF1O14727 1248 aa12.44□□□□□ -0.42
PTPRA-202ENST00000318266 TROQ12816 1431 aaPredicted RBP12.44□□□□□ -0.42
PTPRA-202ENST00000318266 REREQ9P2R6 1566 aa12.43□□□□□ -0.42
PTPRA-202ENST00000318266 COG6Q9Y2V7 657 aa12.43□□□□□ -0.42
PTPRA-202ENST00000318266 PANK1Q8TE04 598 aa12.43□□□□□ -0.42
PTPRA-202ENST00000318266 RAPGEF6Q8TEU7 1601 aa12.43□□□□□ -0.42
PTPRA-202ENST00000318266 E9PCH4 1651 aa12.43□□□□□ -0.42
PTPRA-202ENST00000318266 ARHGEF12Q9NZN5 1544 aa12.43□□□□□ -0.42
PTPRA-202ENST00000318266 BECN1Q14457 450 aa12.43□□□□□ -0.42
PTPRA-202ENST00000318266 C9orf84Q5VXU9 1444 aa12.42□□□□□ -0.42
PTPRA-202ENST00000318266 RIMS1Q86UR5 1692 aaKnown RBP12.42□□□□□ -0.42
PTPRA-202ENST00000318266 SLFN5Q08AF3 891 aa12.42□□□□□ -0.42
PTPRA-202ENST00000318266 PANK2Q9BZ23 570 aa12.42□□□□□ -0.42
PTPRA-202ENST00000318266 CCDC144AA2RUR9 1427 aa12.42□□□□□ -0.42
PTPRA-202ENST00000318266 PRAG1Q86YV5 1406 aa12.42□□□□□ -0.42
PTPRA-202ENST00000318266 DMRT2Q9Y5R5 561 aa12.41□□□□□ -0.42
PTPRA-202ENST00000318266 ERBINQ96RT1 1412 aa12.41□□□□□ -0.42
PTPRA-202ENST00000318266 ADGRL2O95490 1459 aa12.4□□□□□ -0.42
PTPRA-202ENST00000318266 NEUROD2Q15784 382 aa12.4□□□□□ -0.42
PTPRA-202ENST00000318266 PLEKHH2Q8IVE3 1493 aa12.39□□□□□ -0.43
PTPRA-202ENST00000318266 FER1L4A9Z1Z3 1794 aa12.39□□□□□ -0.43
PTPRA-202ENST00000318266 ZNF521Q96K83 1311 aa12.39□□□□□ -0.43
PTPRA-202ENST00000318266 L1TD1Q5T7N2 865 aaKnown RBP12.39□□□□□ -0.43
PTPRA-202ENST00000318266 ZFYVE16Q7Z3T8 1539 aa12.39□□□□□ -0.43
PTPRA-202ENST00000318266 PLEKHD1A6NEE1 506 aa12.38□□□□□ -0.43
PTPRA-202ENST00000318266 ATP10BO94823 1461 aa12.38□□□□□ -0.43
PTPRA-202ENST00000318266 PTPRTO14522 1441 aa12.38□□□□□ -0.43
PTPRA-202ENST00000318266 ADGBQ8N7X0 1667 aa12.38□□□□□ -0.43
PTPRA-202ENST00000318266 XRCC6P12956 609 aaKnown RBP eCLIP12.38□□□□□ -0.43
PTPRA-202ENST00000318266 BCL2L13Q9BXK5 485 aa12.38□□□□□ -0.43
PTPRA-202ENST00000318266 GOLGA6L3A6NEY3 463 aa12.37□□□□□ -0.43
PTPRA-202ENST00000318266 PNNQ9H307 717 aaKnown RBP12.37□□□□□ -0.43
PTPRA-202ENST00000318266 VSIG10Q8N0Z9 540 aa12.37□□□□□ -0.43
PTPRA-202ENST00000318266 CLUAP1Q96AJ1 413 aa12.37□□□□□ -0.43
PTPRA-202ENST00000318266 UPF2Q9HAU5 1272 aaKnown RBP12.37□□□□□ -0.43
PTPRA-202ENST00000318266 TBC1D2Q9BYX2 928 aa12.36□□□□□ -0.43
PTPRA-202ENST00000318266 KDM5DQ9BY66 1539 aa12.36□□□□□ -0.43
PTPRA-202ENST00000318266 PKNOX2Q96KN3 472 aa12.35□□□□□ -0.43
PTPRA-202ENST00000318266 TNNQ9UQP3 1299 aa12.35□□□□□ -0.43
PTPRA-202ENST00000318266 AMER1Q5JTC6 1135 aaPredicted RBP12.35□□□□□ -0.43
PTPRA-202ENST00000318266 ANTXR1Q9H6X2 564 aa12.35□□□□□ -0.43
PTPRA-202ENST00000318266 EIF3AQ14152 1382 aaKnown RBP12.35□□□□□ -0.43
PTPRA-202ENST00000318266 RRP7AQ9Y3A4 280 aaKnown RBP12.35□□□□□ -0.43
PTPRA-202ENST00000318266 CENPJQ9HC77 1338 aaPredicted RBP12.34□□□□□ -0.43
PTPRA-202ENST00000318266 MAPK8IP3Q9UPT6 1336 aa12.34□□□□□ -0.43
PTPRA-202ENST00000318266 A2MP01023 1474 aa12.34□□□□□ -0.43
PTPRA-202ENST00000318266 SPATA31D1Q6ZQQ2 1576 aa12.33□□□□□ -0.43
PTPRA-202ENST00000318266 NKTRP30414 1462 aaKnown RBP12.33□□□□□ -0.44
PTPRA-202ENST00000318266 SETD1BQ9UPS6 1966 aaKnown RBP12.33□□□□□ -0.44
PTPRA-202ENST00000318266 CGNL1Q0VF96 1302 aa12.33□□□□□ -0.44
PTPRA-202ENST00000318266 INSRP06213 1382 aa12.33□□□□□ -0.44
PTPRA-202ENST00000318266 TRPM1Q7Z4N2 1603 aa12.32□□□□□ -0.44
PTPRA-202ENST00000318266 E9PSI1 815 aa12.32□□□□□ -0.44
PTPRA-202ENST00000318266 SOCS7O14512 581 aa12.32□□□□□ -0.44
PTPRA-202ENST00000318266 TNNT2P45379 298 aaPredicted RBP12.32□□□□□ -0.44
PTPRA-202ENST00000318266 CERKQ8TCT0 537 aa12.32□□□□□ -0.44
PTPRA-202ENST00000318266 ITSN2Q9NZM3 1697 aa12.32□□□□□ -0.44
PTPRA-202ENST00000318266 FAM135AQ9P2D6 1515 aa12.32□□□□□ -0.44
PTPRA-202ENST00000318266 PCDHB15Q9Y5E8 787 aa12.32□□□□□ -0.44
PTPRA-202ENST00000318266 MCM4P33991 863 aa12.31□□□□□ -0.44
PTPRA-202ENST00000318266 MFAP1P55081 439 aaKnown RBP12.31□□□□□ -0.44
PTPRA-202ENST00000318266 GPRASP1Q5JY77 1395 aa12.31□□□□□ -0.44
PTPRA-202ENST00000318266 CROCC2H7BZ55 1655 aa12.31□□□□□ -0.44
PTPRA-202ENST00000318266 HSP90AA2PQ14568 343 aaPredicted RBP12.31□□□□□ -0.44
PTPRA-202ENST00000318266 GLIPR1L2Q4G1C9 344 aa12.31□□□□□ -0.44
PTPRA-202ENST00000318266 TRMT2AQ8IZ69 625 aaKnown RBP12.31□□□□□ -0.44
PTPRA-202ENST00000318266 TBC1D32Q96NH3 1257 aa12.31□□□□□ -0.44
PTPRA-202ENST00000318266 PDZRN3Q9UPQ7 1066 aa12.31□□□□□ -0.44
PTPRA-202ENST00000318266 YEATS2Q9ULM3 1422 aa12.3□□□□□ -0.44
PTPRA-202ENST00000318266 HSP90AA1P07900 732 aaKnown RBP12.3□□□□□ -0.44
PTPRA-202ENST00000318266 RLBP1P12271 317 aa12.3□□□□□ -0.44
PTPRA-202ENST00000318266 MROH2AA6NES4 1674 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms