RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 IDI1Q13907 227 aa11.32□□□□□ -0.6
PDLIM5-201ENST00000317968 CFAP70Q5T0N1 1121 aa11.32□□□□□ -0.6
PDLIM5-201ENST00000317968 PRKRIP1Q9H875 184 aaPredicted RBP11.32□□□□□ -0.6
PDLIM5-201ENST00000317968 MYBBP1AQ9BQG0 1328 aaKnown RBP11.32□□□□□ -0.6
PDLIM5-201ENST00000317968 GPRASP1Q5JY77 1395 aa11.31□□□□□ -0.6
PDLIM5-201ENST00000317968 KDM5CP41229 1560 aa11.31□□□□□ -0.6
PDLIM5-201ENST00000317968 C14orf93Q9H972 538 aaKnown RBP11.31□□□□□ -0.6
PDLIM5-201ENST00000317968 STK26Q9P289 416 aa11.3□□□□□ -0.6
PDLIM5-201ENST00000317968 CGNL1Q0VF96 1302 aa11.3□□□□□ -0.6
PDLIM5-201ENST00000317968 AGLP35573 1532 aa11.3□□□□□ -0.6
PDLIM5-201ENST00000317968 PRDM15P57071 1507 aaPredicted RBP11.3□□□□□ -0.6
PDLIM5-201ENST00000317968 MORC1Q86VD1 984 aa11.3□□□□□ -0.6
PDLIM5-201ENST00000317968 NPHP1O15259 732 aa11.29□□□□□ -0.6
PDLIM5-201ENST00000317968 ATAD2Q6PL18 1390 aa11.29□□□□□ -0.6
PDLIM5-201ENST00000317968 NINLQ9Y2I6 1382 aa11.29□□□□□ -0.6
PDLIM5-201ENST00000317968 SENP3Q9H4L4 574 aaPredicted RBP11.28□□□□□ -0.6
PDLIM5-201ENST00000317968 KDM6BO15054 1643 aa11.28□□□□□ -0.6
PDLIM5-201ENST00000317968 NBPF1Q3BBV0 1214 aa11.28□□□□□ -0.6
PDLIM5-201ENST00000317968 EFCAB6Q5THR3 1501 aa11.28□□□□□ -0.6
PDLIM5-201ENST00000317968 NPATQ14207 1427 aa11.27□□□□□ -0.6
PDLIM5-201ENST00000317968 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.27□□□□□ -0.6
PDLIM5-201ENST00000317968 DIP2BQ9P265 1576 aa11.27□□□□□ -0.61
PDLIM5-201ENST00000317968 TXNDC2Q86VQ3 553 aa11.27□□□□□ -0.61
PDLIM5-201ENST00000317968 DNAJC5Q9H3Z4 198 aa11.27□□□□□ -0.61
PDLIM5-201ENST00000317968 NOS1P29475 1434 aa11.27□□□□□ -0.61
PDLIM5-201ENST00000317968 PANK3Q9H999 370 aa11.27□□□□□ -0.61
PDLIM5-201ENST00000317968 YEATS2Q9ULM3 1422 aa11.27□□□□□ -0.61
PDLIM5-201ENST00000317968 MYOM2P54296 1465 aa11.26□□□□□ -0.61
PDLIM5-201ENST00000317968 ZMYM4Q5VZL5 1548 aa11.26□□□□□ -0.61
PDLIM5-201ENST00000317968 BRD4O60885 1362 aaPredicted RBP11.26□□□□□ -0.61
PDLIM5-201ENST00000317968 ZMYM3Q14202 1370 aa11.26□□□□□ -0.61
PDLIM5-201ENST00000317968 SPATA31E1Q6ZUB1 1445 aa11.25□□□□□ -0.61
PDLIM5-201ENST00000317968 MEX3CQ5U5Q3 659 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-201ENST00000317968 ANKLE2Q86XL3 938 aa11.25□□□□□ -0.61
PDLIM5-201ENST00000317968 ABCC3O15438 1527 aa11.25□□□□□ -0.61
PDLIM5-201ENST00000317968 PDE3BQ13370 1112 aa11.25□□□□□ -0.61
PDLIM5-201ENST00000317968 CCDC9Q9Y3X0 531 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-201ENST00000317968 DCAF8L1A6NGE4 600 aa11.24□□□□□ -0.61
PDLIM5-201ENST00000317968 CC2D1BQ5T0F9 858 aaKnown RBP11.23□□□□□ -0.61
PDLIM5-201ENST00000317968 ADGRF5Q8IZF2 1346 aa11.23□□□□□ -0.61
PDLIM5-201ENST00000317968 SBNO2Q9Y2G9 1366 aa11.23□□□□□ -0.61
PDLIM5-201ENST00000317968 ZFYVE9O95405 1425 aa11.23□□□□□ -0.61
PDLIM5-201ENST00000317968 MAP3K4Q9Y6R4 1608 aa11.22□□□□□ -0.61
PDLIM5-201ENST00000317968 NEURL4Q96JN8 1562 aa11.22□□□□□ -0.61
PDLIM5-201ENST00000317968 DIP2CQ9Y2E4 1556 aa11.22□□□□□ -0.61
PDLIM5-201ENST00000317968 RIMS2Q9UQ26 1411 aa11.21□□□□□ -0.61
PDLIM5-201ENST00000317968 NUTM2DQ5VT03 806 aaPredicted RBP11.21□□□□□ -0.61
PDLIM5-201ENST00000317968 ERICH6BQ5W0A0 696 aa11.21□□□□□ -0.61
PDLIM5-201ENST00000317968 FBXO31Q5XUX0 539 aaPredicted RBP11.21□□□□□ -0.61
PDLIM5-201ENST00000317968 MAPK8IP3Q9UPT6 1336 aa11.21□□□□□ -0.62
PDLIM5-201ENST00000317968 PLA2R1Q13018 1463 aa11.21□□□□□ -0.62
PDLIM5-201ENST00000317968 SAFB2Q14151 953 aaKnown RBP eCLIP11.21□□□□□ -0.62
PDLIM5-201ENST00000317968 ZNF692Q9BU19 519 aaPredicted RBP11.21□□□□□ -0.62
PDLIM5-201ENST00000317968 GTF3C3Q9Y5Q9 886 aa11.21□□□□□ -0.62
PDLIM5-201ENST00000317968 ZC3H13Q5T200 1668 aaKnown RBP11.21□□□□□ -0.62
PDLIM5-201ENST00000317968 RNF17Q9BXT8 1623 aaKnown RBP11.2□□□□□ -0.62
PDLIM5-201ENST00000317968 SIRT1Q96EB6 747 aa11.2□□□□□ -0.62
PDLIM5-201ENST00000317968 NLRP1Q9C000 1473 aa11.2□□□□□ -0.62
PDLIM5-201ENST00000317968 REREQ9P2R6 1566 aa11.2□□□□□ -0.62
PDLIM5-201ENST00000317968 ARXQ96QS3 562 aa11.19□□□□□ -0.62
PDLIM5-201ENST00000317968 NSD2O96028 1365 aa11.19□□□□□ -0.62
PDLIM5-201ENST00000317968 MINK1Q8N4C8 1332 aaPredicted RBP11.19□□□□□ -0.62
PDLIM5-201ENST00000317968 KIDINS220Q9ULH0 1771 aa11.19□□□□□ -0.62
PDLIM5-201ENST00000317968 TMEM132EQ6IEE7 984 aa11.19□□□□□ -0.62
PDLIM5-201ENST00000317968 CSB-PGBD3P0DP91 1061 aa11.18□□□□□ -0.62
PDLIM5-201ENST00000317968 TMX4Q9H1E5 349 aaPredicted RBP11.18□□□□□ -0.62
PDLIM5-201ENST00000317968 ERVK-7P63135 1459 aa11.18□□□□□ -0.62
PDLIM5-201ENST00000317968 CALD1Q05682 793 aaKnown RBP11.18□□□□□ -0.62
PDLIM5-201ENST00000317968 VWDEQ8N2E2 1590 aa11.18□□□□□ -0.62
PDLIM5-201ENST00000317968 PRAM1Q96QH2 718 aa11.18□□□□□ -0.62
PDLIM5-201ENST00000317968 ARHGEF40Q8TER5 1519 aa11.17□□□□□ -0.62
PDLIM5-201ENST00000317968 DEPDC5O75140 1603 aa11.16□□□□□ -0.62
PDLIM5-201ENST00000317968 TBX22Q9Y458 520 aa11.16□□□□□ -0.62
PDLIM5-201ENST00000317968 NGDNQ8NEJ9 315 aaKnown RBP11.16□□□□□ -0.62
PDLIM5-201ENST00000317968 MYH16Q9H6N6 1097 aa11.16□□□□□ -0.62
PDLIM5-201ENST00000317968 KIF1BO60333 1816 aa11.16□□□□□ -0.62
PDLIM5-201ENST00000317968 LRPPRCP42704 1394 aaKnown RBP11.16□□□□□ -0.62
PDLIM5-201ENST00000317968 ZBED9Q6R2W3 1325 aa11.15□□□□□ -0.62
PDLIM5-201ENST00000317968 NPC1L1Q9UHC9 1359 aa11.15□□□□□ -0.62
PDLIM5-201ENST00000317968 SPHKAPQ2M3C7 1700 aa11.15□□□□□ -0.62
PDLIM5-201ENST00000317968 COL17A1Q9UMD9 1497 aaPredicted RBP11.15□□□□□ -0.62
PDLIM5-201ENST00000317968 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
PDLIM5-201ENST00000317968 CHMP4AQ9BY43 222 aa11.15□□□□□ -0.62
PDLIM5-201ENST00000317968 COG3Q96JB2 828 aa11.15□□□□□ -0.62
PDLIM5-201ENST00000317968 MS4A1P11836 297 aa11.15□□□□□ -0.63
PDLIM5-201ENST00000317968 TSPOAP1O95153 1857 aa11.14□□□□□ -0.63
PDLIM5-201ENST00000317968 PPM1GO15355 546 aaPredicted RBP11.14□□□□□ -0.63
PDLIM5-201ENST00000317968 ABCA6Q8N139 1617 aa11.14□□□□□ -0.63
PDLIM5-201ENST00000317968 TESK2Q96S53 571 aa11.14□□□□□ -0.63
PDLIM5-201ENST00000317968 PHF23Q9BUL5 403 aaPredicted RBP11.14□□□□□ -0.63
PDLIM5-201ENST00000317968 CCDC61Q9Y6R9 512 aa11.14□□□□□ -0.63
PDLIM5-201ENST00000317968 TMEM2Q9UHN6 1383 aa11.13□□□□□ -0.63
PDLIM5-201ENST00000317968 LMOD3Q0VAK6 560 aa11.13□□□□□ -0.63
PDLIM5-201ENST00000317968 ABCC11Q96J66 1382 aa11.12□□□□□ -0.63
PDLIM5-201ENST00000317968 CDK19Q9BWU1 502 aa11.12□□□□□ -0.63
PDLIM5-201ENST00000317968 CHMP4BQ9H444 224 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-201ENST00000317968 BCL11AQ9H165 835 aa11.12□□□□□ -0.63
PDLIM5-201ENST00000317968 ADGRB3O60242 1522 aa11.11□□□□□ -0.63
PDLIM5-201ENST00000317968 LAMC1P11047 1609 aa11.11□□□□□ -0.63
PDLIM5-201ENST00000317968 YTHDC2Q9H6S0 1430 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms