RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 GLIPR1L2Q4G1C9 344 aa16.31■□□□□ 0.2
RETREG3-201ENST00000309428 ERCC6L2Q5T890 1561 aa16.31■□□□□ 0.2
RETREG3-201ENST00000309428 ERBINQ96RT1 1412 aa16.31■□□□□ 0.2
RETREG3-201ENST00000309428 GGNBP2Q9H3C7 697 aa16.31■□□□□ 0.2
RETREG3-201ENST00000309428 CFAP65Q6ZU64 1925 aaKnown RBP16.31■□□□□ 0.2
RETREG3-201ENST00000309428 GCC2Q8IWJ2 1684 aa16.3■□□□□ 0.2
RETREG3-201ENST00000309428 ELL2O00472 640 aaPredicted RBP16.3■□□□□ 0.2
RETREG3-201ENST00000309428 BRD4O60885 1362 aaPredicted RBP16.3■□□□□ 0.2
RETREG3-201ENST00000309428 PER1O15534 1290 aaPredicted RBP16.3■□□□□ 0.2
RETREG3-201ENST00000309428 BECN1Q14457 450 aa16.3■□□□□ 0.2
RETREG3-201ENST00000309428 SMG6Q86US8 1419 aaKnown RBP16.29■□□□□ 0.2
RETREG3-201ENST00000309428 ARID3AQ99856 593 aa16.29■□□□□ 0.2
RETREG3-201ENST00000309428 SPINK5Q9NQ38 1064 aaPredicted RBP16.29■□□□□ 0.2
RETREG3-201ENST00000309428 FRAT2O75474 233 aaPredicted RBP16.28■□□□□ 0.2
RETREG3-201ENST00000309428 FAM135AQ9P2D6 1515 aa16.27■□□□□ 0.2
RETREG3-201ENST00000309428 DMRT2Q9Y5R5 561 aa16.27■□□□□ 0.2
RETREG3-201ENST00000309428 BCORL1Q5H9F3 1711 aa16.27■□□□□ 0.19
RETREG3-201ENST00000309428 NUP160Q12769 1436 aa16.27■□□□□ 0.19
RETREG3-201ENST00000309428 MTHFSP49914 203 aa16.25■□□□□ 0.19
RETREG3-201ENST00000309428 PRAG1Q86YV5 1406 aa16.25■□□□□ 0.19
RETREG3-201ENST00000309428 TPRNQ4KMQ1 711 aa16.25■□□□□ 0.19
RETREG3-201ENST00000309428 ZBTB7CA1YPR0 619 aa16.24■□□□□ 0.19
RETREG3-201ENST00000309428 ESF1Q9H501 851 aaKnown RBP16.24■□□□□ 0.19
RETREG3-201ENST00000309428 USP35Q9P2H5 1018 aa16.24■□□□□ 0.19
RETREG3-201ENST00000309428 TNNQ9UQP3 1299 aa16.24■□□□□ 0.19
RETREG3-201ENST00000309428 TSR2Q969E8 191 aaKnown RBP16.23■□□□□ 0.19
RETREG3-201ENST00000309428 TRIM44Q96DX7 344 aaPredicted RBP16.23■□□□□ 0.19
RETREG3-201ENST00000309428 BACH2Q9BYV9 841 aa16.22■□□□□ 0.19
RETREG3-201ENST00000309428 A2MP01023 1474 aa16.22■□□□□ 0.19
RETREG3-201ENST00000309428 RALGAPBQ86X10 1494 aa16.22■□□□□ 0.19
RETREG3-201ENST00000309428 MBD5Q9P267 1494 aa16.22■□□□□ 0.19
RETREG3-201ENST00000309428 FTSJ3Q8IY81 847 aaKnown RBP16.21■□□□□ 0.19
RETREG3-201ENST00000309428 CENPJQ9HC77 1338 aaPredicted RBP16.21■□□□□ 0.19
RETREG3-201ENST00000309428 NCLP19338 710 aaKnown RBP16.21■□□□□ 0.18
RETREG3-201ENST00000309428 ABCC10Q5T3U5 1492 aa16.2■□□□□ 0.18
RETREG3-201ENST00000309428 CARD14Q9BXL6 1004 aa16.2■□□□□ 0.18
RETREG3-201ENST00000309428 FBXO31Q5XUX0 539 aaPredicted RBP16.2■□□□□ 0.18
RETREG3-201ENST00000309428 CFAP53Q96M91 514 aa16.19■□□□□ 0.18
RETREG3-201ENST00000309428 APBB1O00213 710 aa16.19■□□□□ 0.18
RETREG3-201ENST00000309428 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
RETREG3-201ENST00000309428 PDE3BQ13370 1112 aa16.18■□□□□ 0.18
RETREG3-201ENST00000309428 AMER1Q5JTC6 1135 aaPredicted RBP16.18■□□□□ 0.18
RETREG3-201ENST00000309428 TCP11L2Q8N4U5 519 aa16.18■□□□□ 0.18
RETREG3-201ENST00000309428 PLEKHH1Q9ULM0 1364 aa16.18■□□□□ 0.18
RETREG3-201ENST00000309428 VSIG10Q8N0Z9 540 aa16.18■□□□□ 0.18
RETREG3-201ENST00000309428 ANP32BQ92688 251 aaKnown RBP16.18■□□□□ 0.18
RETREG3-201ENST00000309428 ITSN2Q9NZM3 1697 aa16.18■□□□□ 0.18
RETREG3-201ENST00000309428 HMOX1P09601 288 aa16.17■□□□□ 0.18
RETREG3-201ENST00000309428 PNNQ9H307 717 aaKnown RBP16.17■□□□□ 0.18
RETREG3-201ENST00000309428 PLA2R1Q13018 1463 aa16.17■□□□□ 0.18
RETREG3-201ENST00000309428 FOXD4L1Q9NU39 408 aa16.17■□□□□ 0.18
RETREG3-201ENST00000309428 MAPK8IP3Q9UPT6 1336 aa16.16■□□□□ 0.18
RETREG3-201ENST00000309428 FAM161AQ3B820 660 aa16.16■□□□□ 0.18
RETREG3-201ENST00000309428 C14orf37Q86TY3 774 aa16.15■□□□□ 0.18
RETREG3-201ENST00000309428 DUSP27Q5VZP5 1158 aa16.15■□□□□ 0.18
RETREG3-201ENST00000309428 ARHGEF12Q9NZN5 1544 aa16.15■□□□□ 0.18
RETREG3-201ENST00000309428 ITPRIPQ8IWB1 547 aa16.14■□□□□ 0.17
RETREG3-201ENST00000309428 THUMPD2Q9BTF0 503 aaKnown RBP16.14■□□□□ 0.17
RETREG3-201ENST00000309428 SAMD9LQ8IVG5 1584 aa16.14■□□□□ 0.17
RETREG3-201ENST00000309428 TTC37Q6PGP7 1564 aa16.13■□□□□ 0.17
RETREG3-201ENST00000309428 UGGT1Q9NYU2 1555 aa16.13■□□□□ 0.17
RETREG3-201ENST00000309428 ADGRL2O95490 1459 aa16.13■□□□□ 0.17
RETREG3-201ENST00000309428 PARD3Q8TEW0 1356 aa16.13■□□□□ 0.17
RETREG3-201ENST00000309428 SMC4Q9NTJ3 1288 aa16.13■□□□□ 0.17
RETREG3-201ENST00000309428 PRAM1Q96QH2 718 aa16.12■□□□□ 0.17
RETREG3-201ENST00000309428 CDC42BPAQ5VT25 1732 aa16.12■□□□□ 0.17
RETREG3-201ENST00000309428 MFAP1P55081 439 aaKnown RBP16.12■□□□□ 0.17
RETREG3-201ENST00000309428 WAPLQ7Z5K2 1190 aa16.12■□□□□ 0.17
RETREG3-201ENST00000309428 EIF3AQ14152 1382 aaKnown RBP16.12■□□□□ 0.17
RETREG3-201ENST00000309428 MS4A1P11836 297 aa16.12■□□□□ 0.17
RETREG3-201ENST00000309428 FAM69CQ0P6D2 419 aa16.12■□□□□ 0.17
RETREG3-201ENST00000309428 NOS1P29475 1434 aa16.11■□□□□ 0.17
RETREG3-201ENST00000309428 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.11■□□□□ 0.176e-6■■■■■ 38.2
RETREG3-201ENST00000309428 KDM5CP41229 1560 aa16.11■□□□□ 0.17
RETREG3-201ENST00000309428 FANCAO15360 1455 aa16.1■□□□□ 0.17
RETREG3-201ENST00000309428 IDI1Q13907 227 aa16.1■□□□□ 0.17
RETREG3-201ENST00000309428 ABCA8O94911 1581 aa16.1■□□□□ 0.17
RETREG3-201ENST00000309428 ADGRL1O94910 1474 aa16.1■□□□□ 0.17
RETREG3-201ENST00000309428 PLCH2O75038 1416 aa16.1■□□□□ 0.17
RETREG3-201ENST00000309428 NSD3Q9BZ95 1437 aa16.09■□□□□ 0.17
RETREG3-201ENST00000309428 SLFN5Q08AF3 891 aa16.08■□□□□ 0.16
RETREG3-201ENST00000309428 IGHDP01880 384 aa16.08■□□□□ 0.16
RETREG3-201ENST00000309428 CENPQQ7L2Z9 268 aaPredicted RBP16.08■□□□□ 0.16
RETREG3-201ENST00000309428 WWC1Q8IX03 1113 aa16.07■□□□□ 0.16
RETREG3-201ENST00000309428 NCKAP5LQ9HCH0 1330 aa16.07■□□□□ 0.16
RETREG3-201ENST00000309428 GOLGA6L3A6NEY3 463 aa16.07■□□□□ 0.16
RETREG3-201ENST00000309428 CABP1Q9NZU7 370 aa16.07■□□□□ 0.16
RETREG3-201ENST00000309428 LRPPRCP42704 1394 aaKnown RBP16.07■□□□□ 0.16
RETREG3-201ENST00000309428 UHRF1BP1Q6BDS2 1440 aa16.06■□□□□ 0.16
RETREG3-201ENST00000309428 E9PSI1 815 aa16.06■□□□□ 0.16
RETREG3-201ENST00000309428 MAGI2Q86UL8 1455 aa16.06■□□□□ 0.16
RETREG3-201ENST00000309428 L1TD1Q5T7N2 865 aaKnown RBP16.06■□□□□ 0.16
RETREG3-201ENST00000309428 C1orf115Q9H7X2 142 aa16.06■□□□□ 0.16
RETREG3-201ENST00000309428 CGNL1Q0VF96 1302 aa16.06■□□□□ 0.16
RETREG3-201ENST00000309428 ZNF428Q96B54 188 aa16.05■□□□□ 0.16
RETREG3-201ENST00000309428 EXOSC9Q06265 439 aaKnown RBP16.04■□□□□ 0.16
RETREG3-201ENST00000309428 TXNDC2Q86VQ3 553 aa16.04■□□□□ 0.16
RETREG3-201ENST00000309428 VGFO15240 615 aaPredicted RBP16.04■□□□□ 0.16
RETREG3-201ENST00000309428 HSP90AB1P08238 724 aaKnown RBP16.04■□□□□ 0.16
RETREG3-201ENST00000309428 RIPK4P57078 832 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms