RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 KIDINS220Q9ULH0 1771 aa14.42□□□□□ -0.1
LSM3-201ENST00000306024 TMF1P82094 1093 aa14.4□□□□□ -0.1
LSM3-201ENST00000306024 KDM5CP41229 1560 aa14.4□□□□□ -0.1
LSM3-201ENST00000306024 PKNOX2Q96KN3 472 aa14.4□□□□□ -0.1
LSM3-201ENST00000306024 TMEM132EQ6IEE7 984 aa14.39□□□□□ -0.11
LSM3-201ENST00000306024 NPATQ14207 1427 aa14.39□□□□□ -0.11
LSM3-201ENST00000306024 TMC1Q8TDI8 760 aa14.39□□□□□ -0.11
LSM3-201ENST00000306024 ZMYM3Q14202 1370 aa14.39□□□□□ -0.11
LSM3-201ENST00000306024 CDCA8Q53HL2 280 aa14.38□□□□□ -0.11
LSM3-201ENST00000306024 KDM5DQ9BY66 1539 aa14.38□□□□□ -0.11
LSM3-201ENST00000306024 DIP2CQ9Y2E4 1556 aa14.37□□□□□ -0.11
LSM3-201ENST00000306024 BRPF3Q9ULD4 1205 aa14.37□□□□□ -0.11
LSM3-201ENST00000306024 ADGRF5Q8IZF2 1346 aa14.37□□□□□ -0.11
LSM3-201ENST00000306024 ABCA6Q8N139 1617 aa14.37□□□□□ -0.11
LSM3-201ENST00000306024 RPGRIP1LQ68CZ1 1315 aa14.36□□□□□ -0.11
LSM3-201ENST00000306024 SENP3-EIF4A1A0A087X0R7 540 aa14.36□□□□□ -0.11
LSM3-201ENST00000306024 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.36□□□□□ -0.11
LSM3-201ENST00000306024 UNC13BO14795 1591 aa14.36□□□□□ -0.11
LSM3-201ENST00000306024 EIF3AQ14152 1382 aaKnown RBP14.35□□□□□ -0.11
LSM3-201ENST00000306024 TXNDC2Q86VQ3 553 aa14.35□□□□□ -0.11
LSM3-201ENST00000306024 USP35Q9P2H5 1018 aa14.35□□□□□ -0.11
LSM3-201ENST00000306024 CNTLNQ9NXG0 1405 aa14.35□□□□□ -0.11
LSM3-201ENST00000306024 IQGAP3Q86VI3 1631 aa14.35□□□□□ -0.11
LSM3-201ENST00000306024 TNRQ92752 1358 aa14.34□□□□□ -0.11
LSM3-201ENST00000306024 PLA2R1Q13018 1463 aa14.34□□□□□ -0.11
LSM3-201ENST00000306024 NOS1P29475 1434 aa14.33□□□□□ -0.11
LSM3-201ENST00000306024 THEMISQ8N1K5 641 aaPredicted RBP14.33□□□□□ -0.12
LSM3-201ENST00000306024 SLC24A1O60721 1099 aa14.33□□□□□ -0.12
LSM3-201ENST00000306024 C14orf37Q86TY3 774 aa14.32□□□□□ -0.12
LSM3-201ENST00000306024 ABCC3O15438 1527 aa14.32□□□□□ -0.12
LSM3-201ENST00000306024 SRPK2P78362 688 aaKnown RBP14.31□□□□□ -0.12
LSM3-201ENST00000306024 EIF2AK4Q9P2K8 1649 aaKnown RBP14.31□□□□□ -0.12
LSM3-201ENST00000306024 RSPH6AQ9H0K4 717 aa14.3□□□□□ -0.12
LSM3-201ENST00000306024 RICTORQ6R327 1708 aa14.3□□□□□ -0.12
LSM3-201ENST00000306024 KIF13AQ9H1H9 1805 aa14.3□□□□□ -0.12
LSM3-201ENST00000306024 TET3O43151 1660 aa14.3□□□□□ -0.12
LSM3-201ENST00000306024 PRDM15P57071 1507 aaPredicted RBP14.3□□□□□ -0.12
LSM3-201ENST00000306024 VSIG10Q8N0Z9 540 aa14.3□□□□□ -0.12
LSM3-201ENST00000306024 UGGT1Q9NYU2 1555 aa14.29□□□□□ -0.12
LSM3-201ENST00000306024 GSE1Q14687 1217 aa14.29□□□□□ -0.12
LSM3-201ENST00000306024 DDRGK1Q96HY6 314 aa14.29□□□□□ -0.12
LSM3-201ENST00000306024 ARXQ96QS3 562 aa14.29□□□□□ -0.12
LSM3-201ENST00000306024 EFCAB6Q5THR3 1501 aa14.29□□□□□ -0.12
LSM3-201ENST00000306024 ZMYM4Q5VZL5 1548 aa14.29□□□□□ -0.12
LSM3-201ENST00000306024 PTPRTO14522 1441 aa14.28□□□□□ -0.12
LSM3-201ENST00000306024 PRAG1Q86YV5 1406 aa14.28□□□□□ -0.12
LSM3-201ENST00000306024 KIF7Q2M1P5 1343 aa14.28□□□□□ -0.12
LSM3-201ENST00000306024 WASHC2AQ641Q2 1341 aa14.28□□□□□ -0.12
LSM3-201ENST00000306024 CENPJQ9HC77 1338 aaPredicted RBP14.28□□□□□ -0.12
LSM3-201ENST00000306024 KNSTRNQ9Y448 316 aa14.28□□□□□ -0.12
LSM3-201ENST00000306024 SLC26A8Q96RN1 970 aa14.27□□□□□ -0.12
LSM3-201ENST00000306024 FRMPD1Q5SYB0 1578 aa14.27□□□□□ -0.12
LSM3-201ENST00000306024 MINK1Q8N4C8 1332 aaPredicted RBP14.27□□□□□ -0.13
LSM3-201ENST00000306024 TRPM2O94759 1503 aa14.26□□□□□ -0.13
LSM3-201ENST00000306024 CCDC7Q96M83 1385 aa14.26□□□□□ -0.13
LSM3-201ENST00000306024 CEP152O94986 1710 aa14.26□□□□□ -0.13
LSM3-201ENST00000306024 ARHGEF40Q8TER5 1519 aa14.25□□□□□ -0.13
LSM3-201ENST00000306024 NAP1L5Q96NT1 182 aaPredicted RBP14.25□□□□□ -0.13
LSM3-201ENST00000306024 E9PCH4 1651 aa14.24□□□□□ -0.13
LSM3-201ENST00000306024 C14orf93Q9H972 538 aaKnown RBP14.24□□□□□ -0.13
LSM3-201ENST00000306024 SPATA31E1Q6ZUB1 1445 aa14.24□□□□□ -0.13
LSM3-201ENST00000306024 ARHGAP31Q2M1Z3 1444 aa14.24□□□□□ -0.13
LSM3-201ENST00000306024 CC2D1BQ5T0F9 858 aaKnown RBP14.23□□□□□ -0.13
LSM3-201ENST00000306024 C11orf95C9JLR9 678 aaPredicted RBP14.23□□□□□ -0.13
LSM3-201ENST00000306024 ANKLE2Q86XL3 938 aa14.23□□□□□ -0.13
LSM3-201ENST00000306024 AGLP35573 1532 aa14.23□□□□□ -0.13
LSM3-201ENST00000306024 RALGAPBQ86X10 1494 aa14.23□□□□□ -0.13
LSM3-201ENST00000306024 NUTM2FA1L443 756 aa14.22□□□□□ -0.13
LSM3-201ENST00000306024 PRAM1Q96QH2 718 aa14.22□□□□□ -0.13
LSM3-201ENST00000306024 ERVK-7P63135 1459 aa14.22□□□□□ -0.13
LSM3-201ENST00000306024 PPRC1Q5VV67 1664 aaKnown RBP14.22□□□□□ -0.13
LSM3-201ENST00000306024 LMTK2Q8IWU2 1503 aa14.21□□□□□ -0.13
LSM3-201ENST00000306024 RIMS2Q9UQ26 1411 aa14.21□□□□□ -0.13
LSM3-201ENST00000306024 UHRF1BP1Q6BDS2 1440 aa14.21□□□□□ -0.13
LSM3-201ENST00000306024 EVC2Q86UK5 1308 aa14.2□□□□□ -0.14
LSM3-201ENST00000306024 PANK3Q9H999 370 aa14.2□□□□□ -0.14
LSM3-201ENST00000306024 RNF17Q9BXT8 1623 aaKnown RBP14.2□□□□□ -0.14
LSM3-201ENST00000306024 SPHKAPQ2M3C7 1700 aa14.19□□□□□ -0.14
LSM3-201ENST00000306024 CLTCL1P53675 1640 aa14.19□□□□□ -0.14
LSM3-201ENST00000306024 TCERG1O14776 1098 aaKnown RBP14.19□□□□□ -0.14
LSM3-201ENST00000306024 ZBED9Q6R2W3 1325 aa14.18□□□□□ -0.14
LSM3-201ENST00000306024 PDE4AP27815 886 aa14.18□□□□□ -0.14
LSM3-201ENST00000306024 DEPDC5O75140 1603 aa14.18□□□□□ -0.14
LSM3-201ENST00000306024 CAMSAP1Q5T5Y3 1602 aa14.17□□□□□ -0.14
LSM3-201ENST00000306024 MROH1Q8NDA8 1641 aa14.17□□□□□ -0.14
LSM3-201ENST00000306024 FRAT1Q92837 279 aaPredicted RBP14.17□□□□□ -0.14
LSM3-201ENST00000306024 VWDEQ8N2E2 1590 aa14.17□□□□□ -0.14
LSM3-201ENST00000306024 SCAF11Q99590 1463 aaKnown RBP14.16□□□□□ -0.14
LSM3-201ENST00000306024 TNNT2P45379 298 aaPredicted RBP14.16□□□□□ -0.14
LSM3-201ENST00000306024 SLC4A3P48751 1232 aa14.16□□□□□ -0.14
LSM3-201ENST00000306024 CABP2Q9NPB3 220 aa14.16□□□□□ -0.14
LSM3-201ENST00000306024 CLTCQ00610 1675 aaKnown RBP14.16□□□□□ -0.14
LSM3-201ENST00000306024 KIF1BO60333 1816 aa14.16□□□□□ -0.14
LSM3-201ENST00000306024 WAPLQ7Z5K2 1190 aa14.16□□□□□ -0.14
LSM3-201ENST00000306024 NUDCQ9Y266 331 aa14.15□□□□□ -0.14
LSM3-201ENST00000306024 NFKBIBQ15653 356 aa14.14□□□□□ -0.15
LSM3-201ENST00000306024 PLEKHG5O94827 1062 aa14.14□□□□□ -0.15
LSM3-201ENST00000306024 HDGFL2Q7Z4V5 671 aaPredicted RBP14.14□□□□□ -0.15
LSM3-201ENST00000306024 CCDC184Q52MB2 194 aa14.13□□□□□ -0.15
LSM3-201ENST00000306024 HSP90AA2PQ14568 343 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms