RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 COG6Q9Y2V7 657 aa9.67□□□□□ -0.86
SCN9A-201ENST00000303354 RIPK4P57078 832 aa9.67□□□□□ -0.86
SCN9A-201ENST00000303354 TSPYL4Q9UJ04 414 aa9.67□□□□□ -0.86
SCN9A-201ENST00000303354 ECM2O94769 699 aaPredicted RBP9.67□□□□□ -0.86
SCN9A-201ENST00000303354 ATP2B2Q01814 1243 aa9.67□□□□□ -0.86
SCN9A-201ENST00000303354 FKBP5Q13451 457 aaPredicted RBP9.67□□□□□ -0.86
SCN9A-201ENST00000303354 NFXL1Q6ZNB6 911 aa9.67□□□□□ -0.86
SCN9A-201ENST00000303354 NACADO15069 1562 aa9.67□□□□□ -0.86
SCN9A-201ENST00000303354 PCMTD1Q96MG8 357 aaPredicted RBP9.67□□□□□ -0.86
SCN9A-201ENST00000303354 HMMRO75330 724 aa9.66□□□□□ -0.86
SCN9A-201ENST00000303354 APAF1O14727 1248 aa9.66□□□□□ -0.86
SCN9A-201ENST00000303354 ADAMTS2O95450 1211 aa9.66□□□□□ -0.86
SCN9A-201ENST00000303354 AMOTL1Q8IY63 956 aa9.66□□□□□ -0.86
SCN9A-201ENST00000303354 PTPRGP23470 1445 aa9.66□□□□□ -0.86
SCN9A-201ENST00000303354 NEXNQ0ZGT2 675 aa9.66□□□□□ -0.86
SCN9A-201ENST00000303354 CHAF1AQ13111 956 aaPredicted RBP9.66□□□□□ -0.86
SCN9A-201ENST00000303354 VGFO15240 615 aaPredicted RBP9.66□□□□□ -0.86
SCN9A-201ENST00000303354 SLC26A8Q96RN1 970 aa9.65□□□□□ -0.86
SCN9A-201ENST00000303354 ANO2Q9NQ90 1003 aa9.65□□□□□ -0.86
SCN9A-201ENST00000303354 EIF3AQ14152 1382 aaKnown RBP9.65□□□□□ -0.86
SCN9A-201ENST00000303354 WASHC4Q2M389 1173 aa9.65□□□□□ -0.86
SCN9A-201ENST00000303354 CEP89Q96ST8 783 aa9.65□□□□□ -0.86
SCN9A-201ENST00000303354 RBM5P52756 815 aaKnown RBP eCLIP9.65□□□□□ -0.86
SCN9A-201ENST00000303354 CHMP4BP1P59074 171 aa9.65□□□□□ -0.86
SCN9A-201ENST00000303354 PAXIP1Q6ZW49 1069 aaPredicted RBP9.65□□□□□ -0.86
SCN9A-201ENST00000303354 CCDC85AQ96PX6 553 aaPredicted RBP9.65□□□□□ -0.86
SCN9A-201ENST00000303354 CCAR1Q8IX12 1150 aaKnown RBP9.65□□□□□ -0.86
SCN9A-201ENST00000303354 EVC2Q86UK5 1308 aa9.65□□□□□ -0.87
SCN9A-201ENST00000303354 MROH2BQ7Z745 1585 aa9.64□□□□□ -0.87
SCN9A-201ENST00000303354 MYCNP04198 464 aaPredicted RBP9.64□□□□□ -0.87
SCN9A-201ENST00000303354 KIF16BQ96L93 1317 aa9.64□□□□□ -0.87
SCN9A-201ENST00000303354 MYL6BP14649 208 aa9.64□□□□□ -0.87
SCN9A-201ENST00000303354 DIAPH1O60610 1272 aaKnown RBP9.64□□□□□ -0.87
SCN9A-201ENST00000303354 IFIT2P09913 472 aaKnown RBP9.64□□□□□ -0.87
SCN9A-201ENST00000303354 SYNE3Q6ZMZ3 975 aa9.64□□□□□ -0.87
SCN9A-201ENST00000303354 TOM1L2Q6ZVM7 507 aa9.64□□□□□ -0.87
SCN9A-201ENST00000303354 PATL2C9JE40 543 aaKnown RBP9.64□□□□□ -0.87
SCN9A-201ENST00000303354 AFAP1Q8N556 730 aa9.64□□□□□ -0.87
SCN9A-201ENST00000303354 CCAR2Q8N163 923 aaKnown RBP9.63□□□□□ -0.87
SCN9A-201ENST00000303354 CRBNQ96SW2 442 aa9.63□□□□□ -0.87
SCN9A-201ENST00000303354 MAP4K4O95819 1239 aaPredicted RBP9.63□□□□□ -0.87
SCN9A-201ENST00000303354 RALBP1Q15311 655 aa9.63□□□□□ -0.87
SCN9A-201ENST00000303354 LMOD3Q0VAK6 560 aa9.62□□□□□ -0.87
SCN9A-201ENST00000303354 FAM161AQ3B820 660 aa9.62□□□□□ -0.87
SCN9A-201ENST00000303354 GRM1Q13255 1194 aa9.62□□□□□ -0.87
SCN9A-201ENST00000303354 ZC3H6P61129 1189 aaKnown RBP9.62□□□□□ -0.87
SCN9A-201ENST00000303354 TPM4P67936 248 aa9.62□□□□□ -0.87
SCN9A-201ENST00000303354 TMEM132AQ24JP5 1023 aa9.62□□□□□ -0.87
SCN9A-201ENST00000303354 DNAJC2Q99543 621 aaKnown RBP9.62□□□□□ -0.87
SCN9A-201ENST00000303354 RRP12Q5JTH9 1297 aaKnown RBP9.61□□□□□ -0.87
SCN9A-201ENST00000303354 DIAPH3Q9NSV4 1193 aa9.61□□□□□ -0.87
SCN9A-201ENST00000303354 CCDC43Q96MW1 224 aaKnown RBP9.61□□□□□ -0.87
SCN9A-201ENST00000303354 BAZ1AQ9NRL2 1556 aaPredicted RBP9.61□□□□□ -0.87
SCN9A-201ENST00000303354 G3BP1Q13283 466 aaKnown RBP eCLIP9.6□□□□□ -0.87
SCN9A-201ENST00000303354 EXOC6Q8TAG9 804 aa9.6□□□□□ -0.87
SCN9A-201ENST00000303354 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.6□□□□□ -0.87
SCN9A-201ENST00000303354 C1orf115Q9H7X2 142 aa9.6□□□□□ -0.87
SCN9A-201ENST00000303354 ATP2B1P20020 1258 aa9.6□□□□□ -0.87
SCN9A-201ENST00000303354 PIBF1Q8WXW3 757 aa9.6□□□□□ -0.87
SCN9A-201ENST00000303354 CCDC144AA2RUR9 1427 aa9.6□□□□□ -0.87
SCN9A-201ENST00000303354 SIL1Q9H173 461 aa9.6□□□□□ -0.87
SCN9A-201ENST00000303354 CFAP44Q96MT7 982 aa9.59□□□□□ -0.87
SCN9A-201ENST00000303354 RBM19Q9Y4C8 960 aaKnown RBP9.59□□□□□ -0.87
SCN9A-201ENST00000303354 RAPGEF3O95398 923 aa9.59□□□□□ -0.87
SCN9A-201ENST00000303354 GBP4Q96PP9 640 aa9.59□□□□□ -0.87
SCN9A-201ENST00000303354 CGNL1Q0VF96 1302 aa9.59□□□□□ -0.87
SCN9A-201ENST00000303354 CCDC180Q9P1Z9 1646 aa9.59□□□□□ -0.87
SCN9A-201ENST00000303354 AQRO60306 1485 aaKnown RBP eCLIP9.58□□□□□ -0.881e-7■■■□□ 15.4
SCN9A-201ENST00000303354 RUSC2Q8N2Y8 1516 aa9.58□□□□□ -0.88
SCN9A-201ENST00000303354 HTATSF1O43719 755 aaKnown RBP9.58□□□□□ -0.88
SCN9A-201ENST00000303354 WIZO95785 1651 aa9.58□□□□□ -0.88
SCN9A-201ENST00000303354 RAD54L2Q9Y4B4 1467 aa9.58□□□□□ -0.88
SCN9A-201ENST00000303354 DEKP35659 375 aaKnown RBP9.58□□□□□ -0.88
SCN9A-201ENST00000303354 TRIM29Q14134 588 aa9.58□□□□□ -0.88
SCN9A-201ENST00000303354 ERICH2A1L162 156 aa9.58□□□□□ -0.88
SCN9A-201ENST00000303354 DDX58O95786 925 aaKnown RBP9.57□□□□□ -0.88
SCN9A-201ENST00000303354 KIF6Q6ZMV9 814 aa9.57□□□□□ -0.88
SCN9A-201ENST00000303354 PRAM1Q96QH2 718 aa9.57□□□□□ -0.88
SCN9A-201ENST00000303354 CNNM1Q9NRU3 951 aa9.57□□□□□ -0.88
SCN9A-201ENST00000303354 CABP4P57796 275 aa9.57□□□□□ -0.88
SCN9A-201ENST00000303354 PDE3BQ13370 1112 aa9.57□□□□□ -0.88
SCN9A-201ENST00000303354 ZSCAN29Q8IWY8 852 aaPredicted RBP9.57□□□□□ -0.88
SCN9A-201ENST00000303354 PRDM2Q13029 1718 aa9.57□□□□□ -0.88
SCN9A-201ENST00000303354 ZNF592Q92610 1267 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 SKIDA1Q1XH10 827 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 CEBPAP49715 358 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-201ENST00000303354 CFAP70Q5T0N1 1121 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 CADPSQ9ULU8 1353 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 CPLX1O14810 134 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 PHF14O94880 888 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 ZFYVE27Q5T4F4 411 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 LNPKQ9C0E8 428 aa9.56□□□□□ -0.88
SCN9A-201ENST00000303354 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.55□□□□□ -0.88
SCN9A-201ENST00000303354 TRDNQ13061 729 aa9.55□□□□□ -0.88
SCN9A-201ENST00000303354 USHBP1Q8N6Y0 703 aa9.55□□□□□ -0.88
SCN9A-201ENST00000303354 FMN1Q68DA7 1419 aa9.55□□□□□ -0.88
SCN9A-201ENST00000303354 ZKSCAN2Q63HK3 967 aa9.55□□□□□ -0.88
SCN9A-201ENST00000303354 RRS1Q15050 365 aaKnown RBP9.55□□□□□ -0.88
SCN9A-201ENST00000303354 SLC4A8Q2Y0W8 1093 aa9.54□□□□□ -0.88
SCN9A-201ENST00000303354 HDAC5Q9UQL6 1122 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms