RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 ST20-MTHFSA0A0A6YYL1 179 aa21.9■■□□□ 1.1
HERPUD1-201ENST00000300302 KIF7Q2M1P5 1343 aa21.89■■□□□ 1.1
HERPUD1-201ENST00000300302 PPLO60437 1756 aa21.89■■□□□ 1.1
HERPUD1-201ENST00000300302 IDI1Q13907 227 aa21.89■■□□□ 1.09
HERPUD1-201ENST00000300302 NRXN1Q9ULB1 1477 aa21.88■■□□□ 1.09
HERPUD1-201ENST00000300302 SPATA31D1Q6ZQQ2 1576 aa21.86■■□□□ 1.09
HERPUD1-201ENST00000300302 ADGRF5Q8IZF2 1346 aa21.86■■□□□ 1.09
HERPUD1-201ENST00000300302 ZMYM3Q14202 1370 aa21.86■■□□□ 1.09
HERPUD1-201ENST00000300302 ANP32CO43423 234 aa21.84■■□□□ 1.09
HERPUD1-201ENST00000300302 TMEM131LA2VDJ0 1609 aa21.83■■□□□ 1.09
HERPUD1-201ENST00000300302 IQGAP1P46940 1657 aa21.82■■□□□ 1.08
HERPUD1-201ENST00000300302 VGFO15240 615 aaPredicted RBP21.82■■□□□ 1.08
HERPUD1-201ENST00000300302 SCAF11Q99590 1463 aaKnown RBP21.82■■□□□ 1.08
HERPUD1-201ENST00000300302 NEXMIFQ5QGS0 1516 aa21.81■■□□□ 1.08
HERPUD1-201ENST00000300302 PIK3C2GO75747 1445 aa21.81■■□□□ 1.08
HERPUD1-201ENST00000300302 CFAP70Q5T0N1 1121 aa21.79■■□□□ 1.08
HERPUD1-201ENST00000300302 EIF3AQ14152 1382 aaKnown RBP21.79■■□□□ 1.08
HERPUD1-201ENST00000300302 CEBPAP49715 358 aaPredicted RBP21.79■■□□□ 1.08
HERPUD1-201ENST00000300302 STAG3Q9UJ98 1225 aa21.79■■□□□ 1.08
HERPUD1-201ENST00000300302 ZFYVE9O95405 1425 aa21.78■■□□□ 1.08
HERPUD1-201ENST00000300302 PLPPR3Q6T4P5 718 aa21.78■■□□□ 1.08
HERPUD1-201ENST00000300302 MYO5BQ9ULV0 1848 aa21.78■■□□□ 1.08
HERPUD1-201ENST00000300302 SETBP1Q9Y6X0 1596 aa21.78■■□□□ 1.08
HERPUD1-201ENST00000300302 POLR3GLQ9BT43 218 aa21.77■■□□□ 1.08
HERPUD1-201ENST00000300302 C14orf93Q9H972 538 aaKnown RBP21.75■■□□□ 1.07
HERPUD1-201ENST00000300302 TESK2Q96S53 571 aa21.75■■□□□ 1.07
HERPUD1-201ENST00000300302 TMF1P82094 1093 aa21.73■■□□□ 1.07
HERPUD1-201ENST00000300302 FER1L4A9Z1Z3 1794 aa21.73■■□□□ 1.07
HERPUD1-201ENST00000300302 TNRQ92752 1358 aa21.72■■□□□ 1.07
HERPUD1-201ENST00000300302 SLC24A1O60721 1099 aa21.71■■□□□ 1.07
HERPUD1-201ENST00000300302 A2ML1A8K2U0 1454 aa21.71■■□□□ 1.07
HERPUD1-201ENST00000300302 CCER2I3L3R5 266 aa21.71■■□□□ 1.07
HERPUD1-201ENST00000300302 NUTM2DQ5VT03 806 aaPredicted RBP21.7■■□□□ 1.06
HERPUD1-201ENST00000300302 ADGRB1O14514 1584 aa21.68■■□□□ 1.06
HERPUD1-201ENST00000300302 C3P01024 1663 aa21.67■■□□□ 1.06
HERPUD1-201ENST00000300302 DISP3Q9P2K9 1392 aa21.67■■□□□ 1.06
HERPUD1-201ENST00000300302 CDCA8Q53HL2 280 aa21.66■■□□□ 1.06
HERPUD1-201ENST00000300302 KDM5AP29375 1690 aaKnown RBP21.66■■□□□ 1.06
HERPUD1-201ENST00000300302 ADAMTSL3P82987 1691 aa21.66■■□□□ 1.06
HERPUD1-201ENST00000300302 YTHDC1Q96MU7 727 aaKnown RBP21.66■■□□□ 1.06
HERPUD1-201ENST00000300302 RIMS1Q86UR5 1692 aaKnown RBP21.65■■□□□ 1.06
HERPUD1-201ENST00000300302 MYO3AQ8NEV4 1616 aa21.65■■□□□ 1.06
HERPUD1-201ENST00000300302 CENPBP07199 599 aaPredicted RBP21.64■■□□□ 1.06
HERPUD1-201ENST00000300302 RIMS2Q9UQ26 1411 aa21.64■■□□□ 1.05
HERPUD1-201ENST00000300302 NLRP1Q9C000 1473 aa21.63■■□□□ 1.05
HERPUD1-201ENST00000300302 HDGFP51858 240 aaKnown RBP21.62■■□□□ 1.05
HERPUD1-201ENST00000300302 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.62■■□□□ 1.05
HERPUD1-201ENST00000300302 TMEM132EQ6IEE7 984 aa21.61■■□□□ 1.05
HERPUD1-201ENST00000300302 SBNO2Q9Y2G9 1366 aa21.61■■□□□ 1.05
HERPUD1-201ENST00000300302 PRKRIP1Q9H875 184 aaPredicted RBP21.6■■□□□ 1.05
HERPUD1-201ENST00000300302 TRAK1Q9UPV9 953 aa21.6■■□□□ 1.05
HERPUD1-201ENST00000300302 CENPJQ9HC77 1338 aaPredicted RBP21.6■■□□□ 1.05
HERPUD1-201ENST00000300302 UBR1Q8IWV7 1749 aa21.59■■□□□ 1.05
HERPUD1-201ENST00000300302 ALKQ9UM73 1620 aa21.57■■□□□ 1.04
HERPUD1-201ENST00000300302 SENP3Q9H4L4 574 aaPredicted RBP21.57■■□□□ 1.04
HERPUD1-201ENST00000300302 QRICH2Q9H0J4 1663 aa21.55■■□□□ 1.04
HERPUD1-201ENST00000300302 TMEM2Q9UHN6 1383 aa21.54■■□□□ 1.04
HERPUD1-201ENST00000300302 ARHGEF28Q8N1W1 1705 aaKnown RBP21.54■■□□□ 1.04
HERPUD1-201ENST00000300302 ASXL1Q8IXJ9 1541 aa21.54■■□□□ 1.04
HERPUD1-201ENST00000300302 KTN1Q86UP2 1357 aaKnown RBP21.51■■□□□ 1.03
HERPUD1-201ENST00000300302 PTPRMP28827 1452 aa21.51■■□□□ 1.03
HERPUD1-201ENST00000300302 YTHDC2Q9H6S0 1430 aaKnown RBP21.51■■□□□ 1.03
HERPUD1-201ENST00000300302 PANK3Q9H999 370 aa21.49■■□□□ 1.03
HERPUD1-201ENST00000300302 STK26Q9P289 416 aa21.48■■□□□ 1.03
HERPUD1-201ENST00000300302 SETD1AO15047 1707 aaKnown RBP21.47■■□□□ 1.03
HERPUD1-201ENST00000300302 PER1O15534 1290 aaPredicted RBP21.47■■□□□ 1.03
HERPUD1-201ENST00000300302 NRXN3Q9Y4C0 1643 aa21.46■■□□□ 1.03
HERPUD1-201ENST00000300302 MYOM1P52179 1685 aa21.46■■□□□ 1.03
HERPUD1-201ENST00000300302 KDM4FA0A1W2PPD8 638 aa21.45■■□□□ 1.02
HERPUD1-201ENST00000300302 RALBP1Q15311 655 aa21.45■■□□□ 1.02
HERPUD1-201ENST00000300302 EID1Q9Y6B2 187 aa21.45■■□□□ 1.02
HERPUD1-201ENST00000300302 THEMISQ8N1K5 641 aaPredicted RBP21.45■■□□□ 1.02
HERPUD1-201ENST00000300302 EVC2Q86UK5 1308 aa21.44■■□□□ 1.02
HERPUD1-201ENST00000300302 SLIT1O75093 1534 aa21.44■■□□□ 1.02
HERPUD1-201ENST00000300302 BCANQ96GW7 911 aa21.43■■□□□ 1.02
HERPUD1-201ENST00000300302 PUS7Q96PZ0 661 aaKnown RBP21.43■■□□□ 1.02
HERPUD1-201ENST00000300302 DLC1Q96QB1 1528 aa21.43■■□□□ 1.02
HERPUD1-201ENST00000300302 LRPPRCP42704 1394 aaKnown RBP21.43■■□□□ 1.02
HERPUD1-201ENST00000300302 CNGB1Q14028 1251 aaPredicted RBP21.43■■□□□ 1.02
HERPUD1-201ENST00000300302 POGKQ9P215 609 aa21.43■■□□□ 1.02
HERPUD1-201ENST00000300302 PLEKHG1Q9ULL1 1385 aa21.43■■□□□ 1.02
HERPUD1-201ENST00000300302 CEP170BQ9Y4F5 1589 aaPredicted RBP21.42■■□□□ 1.02
HERPUD1-201ENST00000300302 LTKP29376 864 aa21.42■■□□□ 1.02
HERPUD1-201ENST00000300302 MRS2Q9HD23 443 aa21.42■■□□□ 1.02
HERPUD1-201ENST00000300302 ARHGAP23Q9P227 1491 aa21.42■■□□□ 1.02
HERPUD1-201ENST00000300302 TXNDC2Q86VQ3 553 aa21.41■■□□□ 1.02
HERPUD1-201ENST00000300302 PRAM1Q96QH2 718 aa21.41■■□□□ 1.02
HERPUD1-201ENST00000300302 ABCC11Q96J66 1382 aa21.41■■□□□ 1.02
HERPUD1-201ENST00000300302 KNSTRNQ9Y448 316 aa21.41■■□□□ 1.02
HERPUD1-201ENST00000300302 MYBBP1AQ9BQG0 1328 aaKnown RBP21.38■■□□□ 1.01
HERPUD1-201ENST00000300302 TULP4Q9NRJ4 1543 aa21.38■■□□□ 1.01
HERPUD1-201ENST00000300302 PARD3Q8TEW0 1356 aa21.38■■□□□ 1.01
HERPUD1-201ENST00000300302 SAFB2Q14151 953 aaKnown RBP eCLIP21.38■■□□□ 1.01
HERPUD1-201ENST00000300302 METP08581 1390 aa21.38■■□□□ 1.01
HERPUD1-201ENST00000300302 CCDC184Q52MB2 194 aa21.37■■□□□ 1.01
HERPUD1-201ENST00000300302 ADAMTS13Q76LX8 1427 aa21.36■■□□□ 1.01
HERPUD1-201ENST00000300302 KNDC1Q76NI1 1749 aa21.35■■□□□ 1.01
HERPUD1-201ENST00000300302 CC2D1BQ5T0F9 858 aaKnown RBP21.34■■□□□ 1.01
HERPUD1-201ENST00000300302 SIRT1Q96EB6 747 aa21.34■■□□□ 1.01
HERPUD1-201ENST00000300302 TECPR2O15040 1411 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms