RNA–Protein interactions for RNA: ENST00000299162.9

FOXN4-201, Transcript of forkhead box N4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXN4, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4-201ENST00000299162 BRD4O60885 1362 aaPredicted RBP13.4□□□□□ -0.26
FOXN4-201ENST00000299162 UNC13BO14795 1591 aa13.39□□□□□ -0.27
FOXN4-201ENST00000299162 ATP7AQ04656 1500 aa13.39□□□□□ -0.27
FOXN4-201ENST00000299162 ZFYVE16Q7Z3T8 1539 aa13.39□□□□□ -0.27
FOXN4-201ENST00000299162 PLXNC1O60486 1568 aa13.38□□□□□ -0.27
FOXN4-201ENST00000299162 EXOC6Q8TAG9 804 aa13.38□□□□□ -0.27
FOXN4-201ENST00000299162 RCAN3Q9UKA8 241 aa13.38□□□□□ -0.27
FOXN4-201ENST00000299162 IQGAP3Q86VI3 1631 aa13.38□□□□□ -0.27
FOXN4-201ENST00000299162 TRPM1Q7Z4N2 1603 aa13.38□□□□□ -0.27
FOXN4-201ENST00000299162 PPP2R1AP30153 589 aa13.37□□□□□ -0.27
FOXN4-201ENST00000299162 SKAP1Q86WV1 359 aa13.36□□□□□ -0.27
FOXN4-201ENST00000299162 LAS1LQ9Y4W2 734 aaKnown RBP13.36□□□□□ -0.27
FOXN4-201ENST00000299162 GPRASP1Q5JY77 1395 aa13.36□□□□□ -0.27
FOXN4-201ENST00000299162 COL17A1Q9UMD9 1497 aaPredicted RBP13.36□□□□□ -0.27
FOXN4-201ENST00000299162 SLC12A5Q9H2X9 1139 aa13.36□□□□□ -0.27
FOXN4-201ENST00000299162 SMG6Q86US8 1419 aaKnown RBP13.35□□□□□ -0.27
FOXN4-201ENST00000299162 STAG3Q9UJ98 1225 aa13.35□□□□□ -0.27
FOXN4-201ENST00000299162 PARD3Q8TEW0 1356 aa13.35□□□□□ -0.27
FOXN4-201ENST00000299162 E9PCH4 1651 aa13.35□□□□□ -0.27
FOXN4-201ENST00000299162 FAM69CQ0P6D2 419 aa13.35□□□□□ -0.27
FOXN4-201ENST00000299162 CDCA8Q53HL2 280 aa13.35□□□□□ -0.27
FOXN4-201ENST00000299162 POLR1AO95602 1720 aaPredicted RBP13.34□□□□□ -0.27
FOXN4-201ENST00000299162 RTEL1-TNFRSF6BF6WH68 1400 aa13.34□□□□□ -0.27
FOXN4-201ENST00000299162 NOS1P29475 1434 aa13.34□□□□□ -0.27
FOXN4-201ENST00000299162 ANP32AP39687 249 aaKnown RBP13.34□□□□□ -0.27
FOXN4-201ENST00000299162 MAGI2Q86UL8 1455 aa13.33□□□□□ -0.28
FOXN4-201ENST00000299162 RRP1P56182 461 aaKnown RBP13.32□□□□□ -0.28
FOXN4-201ENST00000299162 AMER1Q5JTC6 1135 aaPredicted RBP13.32□□□□□ -0.28
FOXN4-201ENST00000299162 ZBTB47Q9UFB7 747 aaPredicted RBP13.32□□□□□ -0.28
FOXN4-201ENST00000299162 CLTCL1P53675 1640 aa13.32□□□□□ -0.28
FOXN4-201ENST00000299162 FBXO31Q5XUX0 539 aaPredicted RBP13.32□□□□□ -0.28
FOXN4-201ENST00000299162 RRP7AQ9Y3A4 280 aaKnown RBP13.32□□□□□ -0.28
FOXN4-201ENST00000299162 APAF1O14727 1248 aa13.31□□□□□ -0.28
FOXN4-201ENST00000299162 CARD14Q9BXL6 1004 aa13.31□□□□□ -0.28
FOXN4-201ENST00000299162 LRPPRCP42704 1394 aaKnown RBP13.31□□□□□ -0.28
FOXN4-201ENST00000299162 CABP2Q9NPB3 220 aa13.3□□□□□ -0.28
FOXN4-201ENST00000299162 CENPJQ9HC77 1338 aaPredicted RBP13.3□□□□□ -0.28
FOXN4-201ENST00000299162 SCAF11Q99590 1463 aaKnown RBP13.3□□□□□ -0.28
FOXN4-201ENST00000299162 PRDM15P57071 1507 aaPredicted RBP13.3□□□□□ -0.28
FOXN4-201ENST00000299162 EIF3AQ14152 1382 aaKnown RBP13.3□□□□□ -0.28
FOXN4-201ENST00000299162 IDI1Q13907 227 aa13.29□□□□□ -0.28
FOXN4-201ENST00000299162 ZNF518AQ6AHZ1 1483 aa13.29□□□□□ -0.28
FOXN4-201ENST00000299162 SRPK2P78362 688 aaKnown RBP13.28□□□□□ -0.28
FOXN4-201ENST00000299162 C20orf194Q5TEA3 1177 aa13.28□□□□□ -0.28
FOXN4-201ENST00000299162 MORC1Q86VD1 984 aa13.28□□□□□ -0.28
FOXN4-201ENST00000299162 PTPRTO14522 1441 aa13.27□□□□□ -0.28
FOXN4-201ENST00000299162 MINK1Q8N4C8 1332 aaPredicted RBP13.27□□□□□ -0.28
FOXN4-201ENST00000299162 TRPM2O94759 1503 aa13.27□□□□□ -0.28
FOXN4-201ENST00000299162 NPATQ14207 1427 aa13.27□□□□□ -0.29
FOXN4-201ENST00000299162 CRBNQ96SW2 442 aa13.26□□□□□ -0.29
FOXN4-201ENST00000299162 ABCA9Q8IUA7 1624 aa13.26□□□□□ -0.29
FOXN4-201ENST00000299162 EIF2AK4Q9P2K8 1649 aaKnown RBP13.26□□□□□ -0.29
FOXN4-201ENST00000299162 POGKQ9P215 609 aa13.24□□□□□ -0.29
FOXN4-201ENST00000299162 SPHKAPQ2M3C7 1700 aa13.24□□□□□ -0.29
FOXN4-201ENST00000299162 YEATS2Q9ULM3 1422 aa13.24□□□□□ -0.29
FOXN4-201ENST00000299162 MADDQ8WXG6 1647 aa13.24□□□□□ -0.29
FOXN4-201ENST00000299162 POGZQ7Z3K3 1410 aa13.24□□□□□ -0.29
FOXN4-201ENST00000299162 PPM1GO15355 546 aaPredicted RBP13.24□□□□□ -0.29
FOXN4-201ENST00000299162 SPINK5Q9NQ38 1064 aaPredicted RBP13.24□□□□□ -0.29
FOXN4-201ENST00000299162 PLEKHH1Q9ULM0 1364 aa13.23□□□□□ -0.29
FOXN4-201ENST00000299162 NEFMP07197 916 aa13.23□□□□□ -0.29
FOXN4-201ENST00000299162 INO80Q9ULG1 1556 aaPredicted RBP13.23□□□□□ -0.29
FOXN4-201ENST00000299162 KIDINS220Q9ULH0 1771 aa13.23□□□□□ -0.29
FOXN4-201ENST00000299162 GOLGA2Q08379 1002 aa13.22□□□□□ -0.29
FOXN4-201ENST00000299162 DMRT2Q9Y5R5 561 aa13.22□□□□□ -0.29
FOXN4-201ENST00000299162 VGFO15240 615 aaPredicted RBP13.21□□□□□ -0.29
FOXN4-201ENST00000299162 GGNBP2Q9H3C7 697 aa13.21□□□□□ -0.29
FOXN4-201ENST00000299162 C14orf93Q9H972 538 aaKnown RBP13.21□□□□□ -0.29
FOXN4-201ENST00000299162 TET3O43151 1660 aa13.21□□□□□ -0.29
FOXN4-201ENST00000299162 CEP152O94986 1710 aa13.21□□□□□ -0.29
FOXN4-201ENST00000299162 FBLN1P23142 703 aa13.21□□□□□ -0.3
FOXN4-201ENST00000299162 PDE3BQ13370 1112 aa13.21□□□□□ -0.3
FOXN4-201ENST00000299162 BCL2L13Q9BXK5 485 aa13.21□□□□□ -0.3
FOXN4-201ENST00000299162 NSD3Q9BZ95 1437 aa13.21□□□□□ -0.3
FOXN4-201ENST00000299162 U2SURPO15042 1029 aaKnown RBP13.2□□□□□ -0.3
FOXN4-201ENST00000299162 CANXP27824 592 aaKnown RBP13.2□□□□□ -0.3
FOXN4-201ENST00000299162 MTHFSP49914 203 aa13.2□□□□□ -0.3
FOXN4-201ENST00000299162 FRAT1Q92837 279 aaPredicted RBP13.2□□□□□ -0.3
FOXN4-201ENST00000299162 PPRC1Q5VV67 1664 aaKnown RBP13.2□□□□□ -0.3
FOXN4-201ENST00000299162 ARAP3Q8WWN8 1544 aa13.2□□□□□ -0.3
FOXN4-201ENST00000299162 STAC3Q96MF2 364 aa13.2□□□□□ -0.3
FOXN4-201ENST00000299162 PRAM1Q96QH2 718 aa13.2□□□□□ -0.3
FOXN4-201ENST00000299162 BCAR3O75815 825 aa13.19□□□□□ -0.3
FOXN4-201ENST00000299162 IPO9Q96P70 1041 aaKnown RBP13.19□□□□□ -0.3
FOXN4-201ENST00000299162 NUTM2FA1L443 756 aa13.18□□□□□ -0.3
FOXN4-201ENST00000299162 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.18□□□□□ -0.3
FOXN4-201ENST00000299162 ESF1Q9H501 851 aaKnown RBP13.18□□□□□ -0.3
FOXN4-201ENST00000299162 ERVK-7P63135 1459 aa13.18□□□□□ -0.3
FOXN4-201ENST00000299162 MROH1Q8NDA8 1641 aa13.18□□□□□ -0.3
FOXN4-201ENST00000299162 RNF123Q5XPI4 1314 aa13.18□□□□□ -0.3
FOXN4-201ENST00000299162 U2AF1L5P0DN76 240 aaPredicted RBP13.18□□□□□ -0.3
FOXN4-201ENST00000299162 U2AF1Q01081 240 aaKnown RBP eCLIP13.18□□□□□ -0.3
FOXN4-201ENST00000299162 EFCAB6Q5THR3 1501 aa13.18□□□□□ -0.3
FOXN4-201ENST00000299162 DUSP27Q5VZP5 1158 aa13.17□□□□□ -0.3
FOXN4-201ENST00000299162 WAPLQ7Z5K2 1190 aa13.17□□□□□ -0.3
FOXN4-201ENST00000299162 ASXL1Q8IXJ9 1541 aa13.17□□□□□ -0.3
FOXN4-201ENST00000299162 RNF17Q9BXT8 1623 aaKnown RBP13.16□□□□□ -0.3
FOXN4-201ENST00000299162 RGS3P49796 1198 aa13.16□□□□□ -0.3
FOXN4-201ENST00000299162 ABCA6Q8N139 1617 aa13.16□□□□□ -0.3
FOXN4-201ENST00000299162 EVC2Q86UK5 1308 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms