RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CAMSAP2Q08AD1 1489 aa17.23■□□□□ 0.35
SKA3-201ENST00000298260 CANXP27824 592 aaKnown RBP17.23■□□□□ 0.35
SKA3-201ENST00000298260 PPP2R1AP30153 589 aa17.23■□□□□ 0.35
SKA3-201ENST00000298260 TESK2Q96S53 571 aa17.23■□□□□ 0.35
SKA3-201ENST00000298260 MYH16Q9H6N6 1097 aa17.23■□□□□ 0.35
SKA3-201ENST00000298260 ARID3AQ99856 593 aa17.22■□□□□ 0.35
SKA3-201ENST00000298260 TBC1D32Q96NH3 1257 aa17.21■□□□□ 0.35
SKA3-201ENST00000298260 GRPEL1Q9HAV7 217 aa17.21■□□□□ 0.35
SKA3-201ENST00000298260 BCL2L13Q9BXK5 485 aa17.21■□□□□ 0.35
SKA3-201ENST00000298260 CLUAP1Q96AJ1 413 aa17.2■□□□□ 0.34
SKA3-201ENST00000298260 ANKRD50Q9ULJ7 1429 aa17.2■□□□□ 0.34
SKA3-201ENST00000298260 GAS2L3Q86XJ1 694 aa17.2■□□□□ 0.34
SKA3-201ENST00000298260 RBM10P98175 930 aaKnown RBP17.2■□□□□ 0.34
SKA3-201ENST00000298260 ABCA8O94911 1581 aa17.19■□□□□ 0.34
SKA3-201ENST00000298260 NEUROD2Q15784 382 aa17.19■□□□□ 0.34
SKA3-201ENST00000298260 PCDHB15Q9Y5E8 787 aa17.19■□□□□ 0.34
SKA3-201ENST00000298260 CLASP1Q7Z460 1538 aa17.18■□□□□ 0.34
SKA3-201ENST00000298260 EIF3AQ14152 1382 aaKnown RBP17.18■□□□□ 0.34
SKA3-201ENST00000298260 MFAP1P55081 439 aaKnown RBP17.18■□□□□ 0.34
SKA3-201ENST00000298260 UPF2Q9HAU5 1272 aaKnown RBP17.18■□□□□ 0.34
SKA3-201ENST00000298260 TROQ12816 1431 aaPredicted RBP17.17■□□□□ 0.34
SKA3-201ENST00000298260 MRE11P49959 708 aa17.17■□□□□ 0.34
SKA3-201ENST00000298260 PDZRN3Q9UPQ7 1066 aa17.17■□□□□ 0.34
SKA3-201ENST00000298260 PODXL2Q9NZ53 605 aa17.16■□□□□ 0.34
SKA3-201ENST00000298260 HNRNPMP52272 730 aaKnown RBP eCLIP17.16■□□□□ 0.34
SKA3-201ENST00000298260 PLEKHH2Q8IVE3 1493 aa17.16■□□□□ 0.34
SKA3-201ENST00000298260 RLBP1P12271 317 aa17.16■□□□□ 0.34
SKA3-201ENST00000298260 KNSTRNQ9Y448 316 aa17.16■□□□□ 0.34
SKA3-201ENST00000298260 MAPK8IP3Q9UPT6 1336 aa17.15■□□□□ 0.34
SKA3-201ENST00000298260 TRIM44Q96DX7 344 aaPredicted RBP17.15■□□□□ 0.34
SKA3-201ENST00000298260 SHROOM2Q13796 1616 aa17.15■□□□□ 0.34
SKA3-201ENST00000298260 FOXD4L1Q9NU39 408 aa17.15■□□□□ 0.34
SKA3-201ENST00000298260 KIAA1211Q6ZU35 1233 aa17.14■□□□□ 0.33
SKA3-201ENST00000298260 ANKRD30AQ9BXX3 1397 aa17.14■□□□□ 0.33
SKA3-201ENST00000298260 VIRMAQ69YN4 1812 aaKnown RBP17.14■□□□□ 0.33
SKA3-201ENST00000298260 CYB5RLQ6IPT4 315 aa17.14■□□□□ 0.33
SKA3-201ENST00000298260 TRMT2AQ8IZ69 625 aaKnown RBP17.13■□□□□ 0.33
SKA3-201ENST00000298260 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.13■□□□□ 0.339e-6■■■□□ 18.9
SKA3-201ENST00000298260 RRP7AQ9Y3A4 280 aaKnown RBP17.13■□□□□ 0.33
SKA3-201ENST00000298260 COL17A1Q9UMD9 1497 aaPredicted RBP17.12■□□□□ 0.33
SKA3-201ENST00000298260 TMF1P82094 1093 aa17.12■□□□□ 0.33
SKA3-201ENST00000298260 NKTRP30414 1462 aaKnown RBP17.12■□□□□ 0.33
SKA3-201ENST00000298260 CHMP5Q9NZZ3 219 aa17.11■□□□□ 0.33
SKA3-201ENST00000298260 PRAG1Q86YV5 1406 aa17.11■□□□□ 0.33
SKA3-201ENST00000298260 ERBINQ96RT1 1412 aa17.11■□□□□ 0.33
SKA3-201ENST00000298260 ARHGEF12Q9NZN5 1544 aa17.11■□□□□ 0.33
SKA3-201ENST00000298260 MAGI2Q86UL8 1455 aa17.11■□□□□ 0.33
SKA3-201ENST00000298260 A0A0U1RQG5 324 aaPredicted RBP17.11■□□□□ 0.33
SKA3-201ENST00000298260 CGNL1Q0VF96 1302 aa17.1■□□□□ 0.33
SKA3-201ENST00000298260 CENPJQ9HC77 1338 aaPredicted RBP17.1■□□□□ 0.33
SKA3-201ENST00000298260 C22orf23Q9BZE7 217 aa17.1■□□□□ 0.33
SKA3-201ENST00000298260 GPATCH8Q9UKJ3 1502 aaKnown RBP17.1■□□□□ 0.33
SKA3-201ENST00000298260 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
SKA3-201ENST00000298260 FAM13BQ9NYF5 915 aa17.07■□□□□ 0.32
SKA3-201ENST00000298260 KDM5DQ9BY66 1539 aa17.07■□□□□ 0.32
SKA3-201ENST00000298260 E9PSI1 815 aa17.06■□□□□ 0.32
SKA3-201ENST00000298260 ZNF692Q9BU19 519 aaPredicted RBP17.06■□□□□ 0.32
SKA3-201ENST00000298260 PDCL3Q9H2J4 239 aa17.06■□□□□ 0.32
SKA3-201ENST00000298260 INSRP06213 1382 aa17.06■□□□□ 0.32
SKA3-201ENST00000298260 PDE3AQ14432 1141 aa17.06■□□□□ 0.32
SKA3-201ENST00000298260 TNPO1Q92973 898 aaKnown RBP17.06■□□□□ 0.32
SKA3-201ENST00000298260 TRPM1Q7Z4N2 1603 aa17.05■□□□□ 0.32
SKA3-201ENST00000298260 ABCC2Q92887 1545 aa17.05■□□□□ 0.32
SKA3-201ENST00000298260 RIPK4P57078 832 aa17.04■□□□□ 0.32
SKA3-201ENST00000298260 TNNT2P45379 298 aaPredicted RBP17.03■□□□□ 0.32
SKA3-201ENST00000298260 CCDC144AA2RUR9 1427 aa17.03■□□□□ 0.32
SKA3-201ENST00000298260 ZBTB7CA1YPR0 619 aa17.03■□□□□ 0.32
SKA3-201ENST00000298260 PRDM4Q9UKN5 801 aa17.02■□□□□ 0.32
SKA3-201ENST00000298260 TSPY4P0CV99 314 aa17.02■□□□□ 0.32
SKA3-201ENST00000298260 TSPY10P0CW01 314 aa17.02■□□□□ 0.32
SKA3-201ENST00000298260 HSCBQ8IWL3 235 aa17.02■□□□□ 0.32
SKA3-201ENST00000298260 ADGBQ8N7X0 1667 aa17.02■□□□□ 0.32
SKA3-201ENST00000298260 TPM2P07951 284 aa17.02■□□□□ 0.31
SKA3-201ENST00000298260 WWC1Q8IX03 1113 aa17.02■□□□□ 0.31
SKA3-201ENST00000298260 RTEL1-TNFRSF6BF6WH68 1400 aa17.01■□□□□ 0.31
SKA3-201ENST00000298260 DDX11L8A8MPP1 907 aa17.01■□□□□ 0.31
SKA3-201ENST00000298260 R3HCC1Q9Y3T6 440 aaKnown RBP17.01■□□□□ 0.31
SKA3-201ENST00000298260 ADGRL2O95490 1459 aa17.01■□□□□ 0.31
SKA3-201ENST00000298260 C9orf84Q5VXU9 1444 aa17■□□□□ 0.31
SKA3-201ENST00000298260 A2MP01023 1474 aa17■□□□□ 0.31
SKA3-201ENST00000298260 WDR7Q9Y4E6 1490 aa17■□□□□ 0.31
SKA3-201ENST00000298260 RARSP54136 660 aaKnown RBP17■□□□□ 0.31
SKA3-201ENST00000298260 PMFBP1Q8TBY8 1022 aa17■□□□□ 0.31
SKA3-201ENST00000298260 PRDM10Q9NQV6 1147 aa17■□□□□ 0.31
SKA3-201ENST00000298260 ABCC10Q5T3U5 1492 aa16.99■□□□□ 0.31
SKA3-201ENST00000298260 TTC37Q6PGP7 1564 aa16.99■□□□□ 0.31
SKA3-201ENST00000298260 ZCCHC11Q5TAX3 1644 aaKnown RBP16.99■□□□□ 0.31
SKA3-201ENST00000298260 ADCY10Q96PN6 1610 aa16.99■□□□□ 0.31
SKA3-201ENST00000298260 CD2BP2O95400 341 aaKnown RBP16.98■□□□□ 0.31
SKA3-201ENST00000298260 CDC42BPAQ5VT25 1732 aa16.98■□□□□ 0.31
SKA3-201ENST00000298260 NPM1P06748 294 aaKnown RBP eCLIP16.97■□□□□ 0.31
SKA3-201ENST00000298260 GPRASP1Q5JY77 1395 aa16.96■□□□□ 0.31
SKA3-201ENST00000298260 NASPP49321 788 aaPredicted RBP16.96■□□□□ 0.31
SKA3-201ENST00000298260 XPCQ01831 940 aaPredicted RBP16.96■□□□□ 0.31
SKA3-201ENST00000298260 RWDD1Q9H446 243 aaPredicted RBP16.96■□□□□ 0.31
SKA3-201ENST00000298260 RBM42Q9BTD8 480 aaKnown RBP16.96■□□□□ 0.3
SKA3-201ENST00000298260 ARHGAP5Q13017 1502 aa16.95■□□□□ 0.3
SKA3-201ENST00000298260 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.95■□□□□ 0.33e-6■■□□□ 13.1
SKA3-201ENST00000298260 HSP90AB1P08238 724 aaKnown RBP16.95■□□□□ 0.3
SKA3-201ENST00000298260 AFAP1Q8N556 730 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms