RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CCDC9Q9Y3X0 531 aaKnown RBP5.85□□□□□ -1.47
CSMD3-201ENST00000297405 HEATR1Q9H583 2144 aaKnown RBP5.85□□□□□ -1.47
CSMD3-201ENST00000297405 RCAN3Q9UKA8 241 aa5.85□□□□□ -1.47
CSMD3-201ENST00000297405 RGS3P49796 1198 aa5.85□□□□□ -1.47
CSMD3-201ENST00000297405 USH1CQ9Y6N9 552 aa5.85□□□□□ -1.47
CSMD3-201ENST00000297405 HOMER1Q86YM7 354 aa5.85□□□□□ -1.47
CSMD3-201ENST00000297405 TUBB4AP04350 444 aa5.85□□□□□ -1.47
CSMD3-201ENST00000297405 PRPF40AO75400 957 aaKnown RBP5.85□□□□□ -1.47
CSMD3-201ENST00000297405 TUBBP07437 444 aa5.85□□□□□ -1.47
CSMD3-201ENST00000297405 GTPBP4Q9BZE4 634 aaKnown RBP5.85□□□□□ -1.47
CSMD3-201ENST00000297405 SLC26A8Q96RN1 970 aa5.84□□□□□ -1.47
CSMD3-201ENST00000297405 DNAJC21Q5F1R6 531 aaKnown RBP5.84□□□□□ -1.47
CSMD3-201ENST00000297405 HIRIP3Q9BW71 556 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-201ENST00000297405 CCDC91Q7Z6B0 441 aa5.84□□□□□ -1.47
CSMD3-201ENST00000297405 RB1CC1Q8TDY2 1594 aa5.84□□□□□ -1.47
CSMD3-201ENST00000297405 PSMD1Q99460 953 aa5.84□□□□□ -1.47
CSMD3-201ENST00000297405 SLKQ9H2G2 1235 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-201ENST00000297405 C14orf37Q86TY3 774 aa5.84□□□□□ -1.47
CSMD3-201ENST00000297405 WDR66Q8TBY9 1149 aa5.83□□□□□ -1.48
CSMD3-201ENST00000297405 CLSTN1O94985 981 aa5.83□□□□□ -1.48
CSMD3-201ENST00000297405 KIF3CO14782 793 aa5.83□□□□□ -1.48
CSMD3-201ENST00000297405 B4GALNT3Q6L9W6 998 aa5.83□□□□□ -1.48
CSMD3-201ENST00000297405 PPM1EQ8WY54 764 aa5.83□□□□□ -1.48
CSMD3-201ENST00000297405 POTEB2H3BUK9 544 aa5.83□□□□□ -1.48
CSMD3-201ENST00000297405 FAM193AP78312 1265 aa5.83□□□□□ -1.48
CSMD3-201ENST00000297405 CPLX2Q6PUV4 134 aaKnown RBP5.83□□□□□ -1.48
CSMD3-201ENST00000297405 CCDC47Q96A33 483 aaKnown RBP5.83□□□□□ -1.48
CSMD3-201ENST00000297405 CT47B1P0C2W7 299 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-201ENST00000297405 SEPT6Q14141 434 aa5.82□□□□□ -1.48
CSMD3-201ENST00000297405 GZF1Q9H116 711 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-201ENST00000297405 BRD2P25440 801 aaKnown RBP5.82□□□□□ -1.48
CSMD3-201ENST00000297405 BCCIPQ9P287 314 aaKnown RBP eCLIP5.82□□□□□ -1.48
CSMD3-201ENST00000297405 CIZ1Q9ULV3 898 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-201ENST00000297405 SETD1BQ9UPS6 1966 aaKnown RBP5.82□□□□□ -1.48
CSMD3-201ENST00000297405 ZBTB17Q13105 803 aa5.82□□□□□ -1.48
CSMD3-201ENST00000297405 RNF214Q8ND24 703 aa5.82□□□□□ -1.48
CSMD3-201ENST00000297405 SMARCE1Q969G3 411 aa5.82□□□□□ -1.48
CSMD3-201ENST00000297405 SCAPERQ9BY12 1400 aa5.82□□□□□ -1.48
CSMD3-201ENST00000297405 HSP90AB3PQ58FF7 597 aa5.82□□□□□ -1.48
CSMD3-201ENST00000297405 PRIMPOLQ96LW4 560 aa5.82□□□□□ -1.48
CSMD3-201ENST00000297405 SHTN1A0MZ66 631 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 TSPY4P0CV99 314 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 TSPY10P0CW01 314 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 CCNB3Q8WWL7 1395 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 TPD52L1Q16890 204 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-201ENST00000297405 GOLGA2Q08379 1002 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 SEPT14Q6ZU15 432 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 DNAAF4Q8WXU2 420 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 CGNQ9P2M7 1197 aaKnown RBP5.81□□□□□ -1.48
CSMD3-201ENST00000297405 NEMFO60524 1076 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 CENPJQ9HC77 1338 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-201ENST00000297405 OS9Q13438 667 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-201ENST00000297405 HS1BP3Q53T59 392 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 IFT57Q9NWB7 429 aa5.81□□□□□ -1.48
CSMD3-201ENST00000297405 NCBP3Q53F19 620 aaKnown RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 CENPHQ9H3R5 247 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 ZSCAN30Q86W11 494 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 RNF168Q8IYW5 571 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 A0A1B0GUA9 196 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 ESPNB1AK53 854 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 ZNF526Q8TF50 670 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 TNIKQ9UKE5 1360 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 MPHOSPH10O00566 681 aaKnown RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 NBPF1Q3BBV0 1214 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 CLASRPQ8N2M8 674 aaKnown RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 DDX12PQ92771 950 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 PDE4DIPQ5VU43 2346 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 SASS6Q6UVJ0 657 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 CCDC50Q8IVM0 306 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 CCDC112Q8NEF3 446 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 PLEKHH2Q8IVE3 1493 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 LMOD3Q0VAK6 560 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 SF3A1Q15459 793 aaKnown RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 CCAR2Q8N163 923 aaKnown RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 RUFY2Q8WXA3 655 aa5.8□□□□□ -1.48
CSMD3-201ENST00000297405 SUDS3Q9H7L9 328 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-201ENST00000297405 NUTM1Q86Y26 1132 aa5.79□□□□□ -1.48
CSMD3-201ENST00000297405 CWC22Q9HCG8 908 aaKnown RBP5.79□□□□□ -1.48
CSMD3-201ENST00000297405 JAKMIP3Q5VZ66 844 aa5.79□□□□□ -1.48
CSMD3-201ENST00000297405 ESF1Q9H501 851 aaKnown RBP5.79□□□□□ -1.48
CSMD3-201ENST00000297405 FBXO3Q9UK99 471 aa5.79□□□□□ -1.48
CSMD3-201ENST00000297405 ATAD2Q6PL18 1390 aa5.79□□□□□ -1.48
CSMD3-201ENST00000297405 ZCCHC6Q5VYS8 1495 aaKnown RBP5.79□□□□□ -1.48
CSMD3-201ENST00000297405 PLEKHD1A6NEE1 506 aa5.79□□□□□ -1.48
CSMD3-201ENST00000297405 MRVI1Q9Y6F6 885 aa5.79□□□□□ -1.48
CSMD3-201ENST00000297405 TERF1P54274 439 aa5.79□□□□□ -1.48
CSMD3-201ENST00000297405 ARID1BQ8NFD5 2236 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-201ENST00000297405 CCDC38Q502W7 563 aa5.78□□□□□ -1.48
CSMD3-201ENST00000297405 TCHPQ9BT92 498 aa5.78□□□□□ -1.48
CSMD3-201ENST00000297405 LRRCC1Q9C099 1032 aa5.78□□□□□ -1.48
CSMD3-201ENST00000297405 E9PSI1 815 aa5.78□□□□□ -1.48
CSMD3-201ENST00000297405 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-201ENST00000297405 PAXBP1Q9Y5B6 917 aa5.78□□□□□ -1.48
CSMD3-201ENST00000297405 IRX6P78412 446 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-201ENST00000297405 TXLNAP40222 546 aa5.78□□□□□ -1.48
CSMD3-201ENST00000297405 SMC1AQ14683 1233 aaKnown RBP5.78□□□□□ -1.48
CSMD3-201ENST00000297405 DDX46Q7L014 1031 aaKnown RBP5.78□□□□□ -1.48
CSMD3-201ENST00000297405 MYH3P11055 1940 aa5.78□□□□□ -1.48
CSMD3-201ENST00000297405 ZKSCAN1P17029 563 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-201ENST00000297405 KIF15Q9NS87 1388 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms