RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 VPS37CA5D8V6 355 aaPredicted RBP14.26□□□□□ -0.13
SHROOM3-201ENST00000296043 SMC2O95347 1197 aa14.26□□□□□ -0.13
SHROOM3-201ENST00000296043 ANKRD45Q5TZF3 282 aa14.26□□□□□ -0.13
SHROOM3-201ENST00000296043 ZBED9Q6R2W3 1325 aa14.25□□□□□ -0.13
SHROOM3-201ENST00000296043 SOX12O15370 315 aa14.25□□□□□ -0.13
SHROOM3-201ENST00000296043 U2AF1L5P0DN76 240 aaPredicted RBP14.25□□□□□ -0.13
SHROOM3-201ENST00000296043 U2AF1Q01081 240 aaKnown RBP eCLIP14.25□□□□□ -0.13
SHROOM3-201ENST00000296043 VPS53Q5VIR6 699 aa14.24□□□□□ -0.13
SHROOM3-201ENST00000296043 ZRSR2Q15696 482 aaKnown RBP14.24□□□□□ -0.13
SHROOM3-201ENST00000296043 ANKRD20A12PQ8NF67 263 aa14.24□□□□□ -0.13
SHROOM3-201ENST00000296043 C22orf23Q9BZE7 217 aa14.24□□□□□ -0.13
SHROOM3-201ENST00000296043 PDIA4P13667 645 aaKnown RBP14.23□□□□□ -0.13
SHROOM3-201ENST00000296043 GTF2A1P52655 376 aaPredicted RBP14.23□□□□□ -0.13
SHROOM3-201ENST00000296043 RSF1Q96T23 1441 aaPredicted RBP14.23□□□□□ -0.13
SHROOM3-201ENST00000296043 CALCOCO1Q9P1Z2 691 aa14.23□□□□□ -0.13
SHROOM3-201ENST00000296043 CCNB3Q8WWL7 1395 aa14.23□□□□□ -0.13
SHROOM3-201ENST00000296043 POGKQ9P215 609 aa14.22□□□□□ -0.13
SHROOM3-201ENST00000296043 CGNL1Q0VF96 1302 aa14.22□□□□□ -0.13
SHROOM3-201ENST00000296043 NUCB2P80303 420 aa14.22□□□□□ -0.13
SHROOM3-201ENST00000296043 ANO2Q9NQ90 1003 aa14.22□□□□□ -0.13
SHROOM3-201ENST00000296043 DCAF11Q8TEB1 546 aa14.22□□□□□ -0.13
SHROOM3-201ENST00000296043 CCDC9Q9Y3X0 531 aaKnown RBP14.21□□□□□ -0.13
SHROOM3-201ENST00000296043 SLC4A10Q6U841 1118 aa14.21□□□□□ -0.13
SHROOM3-201ENST00000296043 PDE3BQ13370 1112 aa14.21□□□□□ -0.13
SHROOM3-201ENST00000296043 BCL2L13Q9BXK5 485 aa14.21□□□□□ -0.13
SHROOM3-201ENST00000296043 PDCL3Q9H2J4 239 aa14.21□□□□□ -0.14
SHROOM3-201ENST00000296043 TOMM22Q9NS69 142 aa14.2□□□□□ -0.14
SHROOM3-201ENST00000296043 RTF1Q92541 710 aaKnown RBP14.2□□□□□ -0.14
SHROOM3-201ENST00000296043 FOXD1Q16676 465 aa14.2□□□□□ -0.14
SHROOM3-201ENST00000296043 PPP4R3BQ5MIZ7 849 aa14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 SETD5Q9C0A6 1442 aa14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 GOLGA6L7A0A1B0GV03 622 aa14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 RRP7AQ9Y3A4 280 aaKnown RBP14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 SPDYE4A6NLX3 237 aa14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 CCDC73Q6ZRK6 1079 aa14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 GOLGA6L10A6NI86 522 aa14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.19□□□□□ -0.14
SHROOM3-201ENST00000296043 GTF2F1P35269 517 aaKnown RBP eCLIP14.18□□□□□ -0.14
SHROOM3-201ENST00000296043 CLASRPQ8N2M8 674 aaKnown RBP14.18□□□□□ -0.14
SHROOM3-201ENST00000296043 POLR3GO15318 223 aaPredicted RBP14.18□□□□□ -0.14
SHROOM3-201ENST00000296043 COG6Q9Y2V7 657 aa14.18□□□□□ -0.14
SHROOM3-201ENST00000296043 NAT10Q9H0A0 1025 aaKnown RBP14.18□□□□□ -0.14
SHROOM3-201ENST00000296043 EIF3JO75822 258 aaKnown RBP14.18□□□□□ -0.14
SHROOM3-201ENST00000296043 MARCH6O60337 910 aa14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 REC8O95072 547 aa14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 MSH5O43196 834 aa14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 CCP110O43303 1012 aa14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 CCDC102AQ96A19 550 aa14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 ROCK2O75116 1388 aaKnown RBP14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 CCDC27Q2M243 656 aa14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 LMOD2Q6P5Q4 547 aa14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 HOOK1Q9UJC3 728 aaKnown RBP14.17□□□□□ -0.14
SHROOM3-201ENST00000296043 ENOX2Q16206 610 aaKnown RBP14.16□□□□□ -0.14
SHROOM3-201ENST00000296043 TIGD1Q96MW7 591 aa14.16□□□□□ -0.14
SHROOM3-201ENST00000296043 PRPF40AO75400 957 aaKnown RBP14.16□□□□□ -0.14
SHROOM3-201ENST00000296043 XPCQ01831 940 aaPredicted RBP14.16□□□□□ -0.14
SHROOM3-201ENST00000296043 FAM177A1Q8N128 213 aaPredicted RBP14.15□□□□□ -0.14
SHROOM3-201ENST00000296043 SMC3Q9UQE7 1217 aa14.15□□□□□ -0.14
SHROOM3-201ENST00000296043 TRIM34Q9BYJ4 488 aa14.15□□□□□ -0.14
SHROOM3-201ENST00000296043 SAFB2Q14151 953 aaKnown RBP eCLIP14.14□□□□□ -0.15
SHROOM3-201ENST00000296043 CCAR1Q8IX12 1150 aaKnown RBP14.14□□□□□ -0.15
SHROOM3-201ENST00000296043 HSP90AB2PQ58FF8 381 aa14.14□□□□□ -0.15
SHROOM3-201ENST00000296043 OLFM4Q6UX06 510 aa14.14□□□□□ -0.15
SHROOM3-201ENST00000296043 STK31Q9BXU1 1019 aa14.14□□□□□ -0.15
SHROOM3-201ENST00000296043 LRRCC1Q9C099 1032 aa14.14□□□□□ -0.15
SHROOM3-201ENST00000296043 SRPK2P78362 688 aaKnown RBP14.13□□□□□ -0.15
SHROOM3-201ENST00000296043 ODF2Q5BJF6 829 aa14.13□□□□□ -0.15
SHROOM3-201ENST00000296043 DDX11Q96FC9 970 aa14.13□□□□□ -0.15
SHROOM3-201ENST00000296043 VGLL3A8MV65 326 aa14.13□□□□□ -0.15
SHROOM3-201ENST00000296043 CLGNO14967 610 aa14.13□□□□□ -0.15
SHROOM3-201ENST00000296043 KAT6BQ8WYB5 2073 aa14.13□□□□□ -0.15
SHROOM3-201ENST00000296043 CT47A1Q5JQC4 288 aaPredicted RBP14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 ZSCAN30Q86W11 494 aa14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 NEXNQ0ZGT2 675 aa14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 MBD3O95983 291 aa14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 RBM33Q96EV2 1170 aaKnown RBP14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 ERLIN1O75477 346 aa14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 FMNL2Q96PY5 1086 aa14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 DNAJC2Q99543 621 aaKnown RBP14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 LMOD3Q0VAK6 560 aa14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 MYO6Q9UM54 1294 aa14.12□□□□□ -0.15
SHROOM3-201ENST00000296043 AKAP17AQ02040 695 aaKnown RBP14.11□□□□□ -0.15
SHROOM3-201ENST00000296043 PHLDB1Q86UU1 1377 aa14.11□□□□□ -0.15
SHROOM3-201ENST00000296043 RNF187Q5TA31 235 aaPredicted RBP14.11□□□□□ -0.15
SHROOM3-201ENST00000296043 TAX1BP1Q86VP1 789 aa14.11□□□□□ -0.15
SHROOM3-201ENST00000296043 MNAT1P51948 309 aa14.1□□□□□ -0.15
SHROOM3-201ENST00000296043 NLRP13Q86W25 1043 aa14.1□□□□□ -0.15
SHROOM3-201ENST00000296043 KIF15Q9NS87 1388 aa14.1□□□□□ -0.15
SHROOM3-201ENST00000296043 ZNF330Q9Y3S2 320 aaPredicted RBP14.1□□□□□ -0.15
SHROOM3-201ENST00000296043 FIBPO43427 364 aa14.1□□□□□ -0.15
SHROOM3-201ENST00000296043 LETM1O95202 739 aaPredicted RBP14.1□□□□□ -0.15
SHROOM3-201ENST00000296043 RAB3GAP2Q9H2M9 1393 aa14.1□□□□□ -0.15
SHROOM3-201ENST00000296043 TNIKQ9UKE5 1360 aa14.09□□□□□ -0.15
SHROOM3-201ENST00000296043 SRRTQ9BXP5 876 aaKnown RBP14.08□□□□□ -0.16
SHROOM3-201ENST00000296043 SDF4Q9BRK5 362 aa14.08□□□□□ -0.16
SHROOM3-201ENST00000296043 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.08□□□□□ -0.16
SHROOM3-201ENST00000296043 NOL10Q9BSC4 688 aaKnown RBP14.08□□□□□ -0.16
SHROOM3-201ENST00000296043 TRIM29Q14134 588 aa14.07□□□□□ -0.16
SHROOM3-201ENST00000296043 ZKSCAN2Q63HK3 967 aa14.07□□□□□ -0.16
SHROOM3-201ENST00000296043 SHTN1A0MZ66 631 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms