RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 CALD1Q05682 793 aaKnown RBP20.39■□□□□ 0.85
CTDSP1-201ENST00000273062 PDE4CQ08493 712 aa20.38■□□□□ 0.85
CTDSP1-201ENST00000273062 CRBNQ96SW2 442 aa20.38■□□□□ 0.85
CTDSP1-201ENST00000273062 SLKQ9H2G2 1235 aaPredicted RBP20.37■□□□□ 0.85
CTDSP1-201ENST00000273062 IQGAP3Q86VI3 1631 aa20.36■□□□□ 0.85
CTDSP1-201ENST00000273062 SPAG9O60271 1321 aaKnown RBP20.36■□□□□ 0.85
CTDSP1-201ENST00000273062 POLR1AO95602 1720 aaPredicted RBP20.36■□□□□ 0.85
CTDSP1-201ENST00000273062 PDCL3Q9H2J4 239 aa20.36■□□□□ 0.85
CTDSP1-201ENST00000273062 ERBINQ96RT1 1412 aa20.36■□□□□ 0.85
CTDSP1-201ENST00000273062 FAM161AQ3B820 660 aa20.35■□□□□ 0.85
CTDSP1-201ENST00000273062 GZF1Q9H116 711 aaPredicted RBP20.34■□□□□ 0.85
CTDSP1-201ENST00000273062 ST20-MTHFSA0A0A6YYL1 179 aa20.33■□□□□ 0.85
CTDSP1-201ENST00000273062 ASXL2Q76L83 1435 aa20.33■□□□□ 0.85
CTDSP1-201ENST00000273062 FANCAO15360 1455 aa20.33■□□□□ 0.84
CTDSP1-201ENST00000273062 MAGI2Q86UL8 1455 aa20.33■□□□□ 0.84
CTDSP1-201ENST00000273062 ZFYVE16Q7Z3T8 1539 aa20.32■□□□□ 0.84
CTDSP1-201ENST00000273062 FSD2A1L4K1 749 aa20.32■□□□□ 0.84
CTDSP1-201ENST00000273062 GOLGA6L3A6NEY3 463 aa20.32■□□□□ 0.84
CTDSP1-201ENST00000273062 ROCK2O75116 1388 aaKnown RBP20.32■□□□□ 0.84
CTDSP1-201ENST00000273062 CDCA7LQ96GN5 454 aa20.31■□□□□ 0.84
CTDSP1-201ENST00000273062 CENPJQ9HC77 1338 aaPredicted RBP20.31■□□□□ 0.84
CTDSP1-201ENST00000273062 NBPF1Q3BBV0 1214 aa20.31■□□□□ 0.84
CTDSP1-201ENST00000273062 TMC1Q8TDI8 760 aa20.31■□□□□ 0.84
CTDSP1-201ENST00000273062 A2MP01023 1474 aa20.3■□□□□ 0.84
CTDSP1-201ENST00000273062 C20orf194Q5TEA3 1177 aa20.3■□□□□ 0.84
CTDSP1-201ENST00000273062 OSCARQ8IYS5 282 aa20.3■□□□□ 0.84
CTDSP1-201ENST00000273062 PRAG1Q86YV5 1406 aa20.3■□□□□ 0.84
CTDSP1-201ENST00000273062 KDM2BQ8NHM5 1336 aa20.29■□□□□ 0.84
CTDSP1-201ENST00000273062 ABCA9Q8IUA7 1624 aa20.29■□□□□ 0.84
CTDSP1-201ENST00000273062 ESPNB1AK53 854 aa20.28■□□□□ 0.84
CTDSP1-201ENST00000273062 ARAP3Q8WWN8 1544 aa20.28■□□□□ 0.84
CTDSP1-201ENST00000273062 BCL11BQ9C0K0 894 aaPredicted RBP20.27■□□□□ 0.84
CTDSP1-201ENST00000273062 SCAPERQ9BY12 1400 aa20.26■□□□□ 0.83
CTDSP1-201ENST00000273062 KTN1Q86UP2 1357 aaKnown RBP20.26■□□□□ 0.83
CTDSP1-201ENST00000273062 ADGRL1O94910 1474 aa20.26■□□□□ 0.83
CTDSP1-201ENST00000273062 TRPM1Q7Z4N2 1603 aa20.25■□□□□ 0.83
CTDSP1-201ENST00000273062 USP19O94966 1318 aa20.24■□□□□ 0.83
CTDSP1-201ENST00000273062 RTEL1-TNFRSF6BF6WH68 1400 aa20.24■□□□□ 0.83
CTDSP1-201ENST00000273062 ATP7AQ04656 1500 aa20.24■□□□□ 0.83
CTDSP1-201ENST00000273062 LRPPRCP42704 1394 aaKnown RBP20.23■□□□□ 0.83
CTDSP1-201ENST00000273062 TPM2P07951 284 aa20.22■□□□□ 0.83
CTDSP1-201ENST00000273062 E9PCH4 1651 aa20.22■□□□□ 0.83
CTDSP1-201ENST00000273062 INO80Q9ULG1 1556 aaPredicted RBP20.21■□□□□ 0.83
CTDSP1-201ENST00000273062 ATP10AO60312 1499 aa20.2■□□□□ 0.82
CTDSP1-201ENST00000273062 KIF3BO15066 747 aa20.2■□□□□ 0.82
CTDSP1-201ENST00000273062 ANTXR1Q9H6X2 564 aa20.2■□□□□ 0.82
CTDSP1-201ENST00000273062 KIAA1211Q6ZU35 1233 aa20.2■□□□□ 0.82
CTDSP1-201ENST00000273062 ZHX1Q9UKY1 873 aaPredicted RBP20.19■□□□□ 0.82
CTDSP1-201ENST00000273062 SEC24BO95487 1268 aa20.18■□□□□ 0.82
CTDSP1-201ENST00000273062 ARID3AQ99856 593 aa20.18■□□□□ 0.82
CTDSP1-201ENST00000273062 NPM1P06748 294 aaKnown RBP eCLIP20.17■□□□□ 0.82
CTDSP1-201ENST00000273062 RIPK4P57078 832 aa20.17■□□□□ 0.82
CTDSP1-201ENST00000273062 CENPQQ7L2Z9 268 aaPredicted RBP20.16■□□□□ 0.82
CTDSP1-201ENST00000273062 DEPDC5O75140 1603 aa20.15■□□□□ 0.82
CTDSP1-201ENST00000273062 MYH16Q9H6N6 1097 aa20.15■□□□□ 0.82
CTDSP1-201ENST00000273062 GPRASP1Q5JY77 1395 aa20.14■□□□□ 0.81
CTDSP1-201ENST00000273062 PRDM10Q9NQV6 1147 aa20.13■□□□□ 0.81
CTDSP1-201ENST00000273062 SPRYD3Q8NCJ5 442 aa20.12■□□□□ 0.81
CTDSP1-201ENST00000273062 DISP3Q9P2K9 1392 aa20.12■□□□□ 0.81
CTDSP1-201ENST00000273062 CLTCL1P53675 1640 aa20.12■□□□□ 0.81
CTDSP1-201ENST00000273062 TRPM2O94759 1503 aa20.11■□□□□ 0.81
CTDSP1-201ENST00000273062 MRE11P49959 708 aa20.11■□□□□ 0.81
CTDSP1-201ENST00000273062 GRPEL1Q9HAV7 217 aa20.11■□□□□ 0.81
CTDSP1-201ENST00000273062 MROH1Q8NDA8 1641 aa20.11■□□□□ 0.81
CTDSP1-201ENST00000273062 PRDM15P57071 1507 aaPredicted RBP20.11■□□□□ 0.81
CTDSP1-201ENST00000273062 FAM13BQ9NYF5 915 aa20.11■□□□□ 0.81
CTDSP1-201ENST00000273062 KIDINS220Q9ULH0 1771 aa20.11■□□□□ 0.81
CTDSP1-201ENST00000273062 CD109Q6YHK3 1445 aa20.1■□□□□ 0.81
CTDSP1-201ENST00000273062 PDIA4P13667 645 aaKnown RBP20.1■□□□□ 0.81
CTDSP1-201ENST00000273062 TESK2Q96S53 571 aa20.1■□□□□ 0.81
CTDSP1-201ENST00000273062 SPHKAPQ2M3C7 1700 aa20.1■□□□□ 0.81
CTDSP1-201ENST00000273062 UGGT1Q9NYU2 1555 aa20.1■□□□□ 0.81
CTDSP1-201ENST00000273062 AEBP2Q6ZN18 517 aaPredicted RBP20.1■□□□□ 0.81
CTDSP1-201ENST00000273062 PTPRTO14522 1441 aa20.1■□□□□ 0.81
CTDSP1-201ENST00000273062 BBXQ8WY36 941 aaPredicted RBP20.09■□□□□ 0.81
CTDSP1-201ENST00000273062 MCM4P33991 863 aa20.09■□□□□ 0.81
CTDSP1-201ENST00000273062 VWDEQ8N2E2 1590 aa20.09■□□□□ 0.81
CTDSP1-201ENST00000273062 TET3O43151 1660 aa20.09■□□□□ 0.81
CTDSP1-201ENST00000273062 KANK1Q14678 1352 aa20.08■□□□□ 0.81
CTDSP1-201ENST00000273062 GTF2E1P29083 439 aaPredicted RBP20.08■□□□□ 0.8
CTDSP1-201ENST00000273062 EIF2AK4Q9P2K8 1649 aaKnown RBP20.07■□□□□ 0.8
CTDSP1-201ENST00000273062 TRAK2O60296 914 aa20.06■□□□□ 0.8
CTDSP1-201ENST00000273062 MADDQ8WXG6 1647 aa20.06■□□□□ 0.8
CTDSP1-201ENST00000273062 ZNF518AQ6AHZ1 1483 aa20.06■□□□□ 0.8
CTDSP1-201ENST00000273062 PDE3BQ13370 1112 aa20.06■□□□□ 0.8
CTDSP1-201ENST00000273062 BECN1Q14457 450 aa20.06■□□□□ 0.8
CTDSP1-201ENST00000273062 TRIM44Q96DX7 344 aaPredicted RBP20.06■□□□□ 0.8
CTDSP1-201ENST00000273062 CEP152O94986 1710 aa20.05■□□□□ 0.8
CTDSP1-201ENST00000273062 COL17A1Q9UMD9 1497 aaPredicted RBP20.04■□□□□ 0.8
CTDSP1-201ENST00000273062 LAMC1P11047 1609 aa20.04■□□□□ 0.8
CTDSP1-201ENST00000273062 TBC1D2Q9BYX2 928 aa20.03■□□□□ 0.8
CTDSP1-201ENST00000273062 RNF17Q9BXT8 1623 aaKnown RBP20.03■□□□□ 0.8
CTDSP1-201ENST00000273062 POGZQ7Z3K3 1410 aa20.03■□□□□ 0.8
CTDSP1-201ENST00000273062 BRD4O60885 1362 aaPredicted RBP20.03■□□□□ 0.8
CTDSP1-201ENST00000273062 RAPGEF3O95398 923 aa20.03■□□□□ 0.8
CTDSP1-201ENST00000273062 MYBBP1AQ9BQG0 1328 aaKnown RBP20.02■□□□□ 0.8
CTDSP1-201ENST00000273062 GAS2L3Q86XJ1 694 aa20.02■□□□□ 0.8
CTDSP1-201ENST00000273062 NLRP1Q9C000 1473 aa20.02■□□□□ 0.8
CTDSP1-201ENST00000273062 CHMP4BQ9H444 224 aaKnown RBP20.01■□□□□ 0.79
CTDSP1-201ENST00000273062 SMAP1Q8IYB5 467 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms