RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ADGRF5Q8IZF2 1346 aa19.8■□□□□ 0.76
SS18-201ENST00000269137 ZFYVE9O95405 1425 aa19.78■□□□□ 0.76
SS18-201ENST00000269137 NEXMIFQ5QGS0 1516 aa19.78■□□□□ 0.76
SS18-201ENST00000269137 WASHC2AQ641Q2 1341 aa19.77■□□□□ 0.76
SS18-201ENST00000269137 MYO5BQ9ULV0 1848 aa19.76■□□□□ 0.75
SS18-201ENST00000269137 VGFO15240 615 aaPredicted RBP19.76■□□□□ 0.75
SS18-201ENST00000269137 DDX10Q13206 875 aaKnown RBP19.76■□□□□ 0.75
SS18-201ENST00000269137 FER1L4A9Z1Z3 1794 aa19.76■□□□□ 0.75
SS18-201ENST00000269137 PIK3C2GO75747 1445 aa19.75■□□□□ 0.75
SS18-201ENST00000269137 TNRQ92752 1358 aa19.75■□□□□ 0.75
SS18-201ENST00000269137 POLR1AO95602 1720 aaPredicted RBP19.75■□□□□ 0.75
SS18-201ENST00000269137 CCDC7Q96M83 1385 aa19.74■□□□□ 0.75
SS18-201ENST00000269137 ST20-MTHFSA0A0A6YYL1 179 aa19.74■□□□□ 0.75
SS18-201ENST00000269137 C11orf95C9JLR9 678 aaPredicted RBP19.74■□□□□ 0.75
SS18-201ENST00000269137 A2ML1A8K2U0 1454 aa19.72■□□□□ 0.75
SS18-201ENST00000269137 CFAP70Q5T0N1 1121 aa19.72■□□□□ 0.75
SS18-201ENST00000269137 C14orf93Q9H972 538 aaKnown RBP19.72■□□□□ 0.75
SS18-201ENST00000269137 STAG3Q9UJ98 1225 aa19.72■□□□□ 0.75
SS18-201ENST00000269137 C3P01024 1663 aa19.71■□□□□ 0.75
SS18-201ENST00000269137 IQGAP1P46940 1657 aa19.71■□□□□ 0.75
SS18-201ENST00000269137 SCAF11Q99590 1463 aaKnown RBP19.71■□□□□ 0.75
SS18-201ENST00000269137 SETBP1Q9Y6X0 1596 aa19.7■□□□□ 0.74
SS18-201ENST00000269137 KDM5AP29375 1690 aaKnown RBP19.7■□□□□ 0.74
SS18-201ENST00000269137 KIF7Q2M1P5 1343 aa19.7■□□□□ 0.74
SS18-201ENST00000269137 MIER1Q8N108 512 aa19.69■□□□□ 0.74
SS18-201ENST00000269137 NLRP1Q9C000 1473 aa19.68■□□□□ 0.74
SS18-201ENST00000269137 CEBPAP49715 358 aaPredicted RBP19.67■□□□□ 0.74
SS18-201ENST00000269137 ADAMTSL3P82987 1691 aa19.66■□□□□ 0.74
SS18-201ENST00000269137 TESK2Q96S53 571 aa19.65■□□□□ 0.74
SS18-201ENST00000269137 NUTM2DQ5VT03 806 aaPredicted RBP19.65■□□□□ 0.74
SS18-201ENST00000269137 EIF3AQ14152 1382 aaKnown RBP19.64■□□□□ 0.73
SS18-201ENST00000269137 ADGRB1O14514 1584 aa19.64■□□□□ 0.73
SS18-201ENST00000269137 RIMS2Q9UQ26 1411 aa19.64■□□□□ 0.73
SS18-201ENST00000269137 UBR1Q8IWV7 1749 aa19.62■□□□□ 0.73
SS18-201ENST00000269137 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.62■□□□□ 0.73
SS18-201ENST00000269137 HDGFP51858 240 aaKnown RBP19.6■□□□□ 0.73
SS18-201ENST00000269137 RIMS1Q86UR5 1692 aaKnown RBP19.6■□□□□ 0.73
SS18-201ENST00000269137 SLC24A1O60721 1099 aa19.59■□□□□ 0.73
SS18-201ENST00000269137 TMEM2Q9UHN6 1383 aa19.58■□□□□ 0.73
SS18-201ENST00000269137 TMF1P82094 1093 aa19.58■□□□□ 0.72
SS18-201ENST00000269137 MYO3AQ8NEV4 1616 aa19.57■□□□□ 0.72
SS18-201ENST00000269137 TMEM132EQ6IEE7 984 aa19.56■□□□□ 0.72
SS18-201ENST00000269137 ALKQ9UM73 1620 aa19.56■□□□□ 0.72
SS18-201ENST00000269137 DISP3Q9P2K9 1392 aa19.55■□□□□ 0.72
SS18-201ENST00000269137 SBNO2Q9Y2G9 1366 aa19.55■□□□□ 0.72
SS18-201ENST00000269137 ASXL1Q8IXJ9 1541 aa19.54■□□□□ 0.72
SS18-201ENST00000269137 ANP32CO43423 234 aa19.53■□□□□ 0.72
SS18-201ENST00000269137 SETD1BQ9UPS6 1966 aaKnown RBP19.52■□□□□ 0.72
SS18-201ENST00000269137 SLIT1O75093 1534 aa19.52■□□□□ 0.72
SS18-201ENST00000269137 CDCA8Q53HL2 280 aa19.52■□□□□ 0.72
SS18-201ENST00000269137 PLPPR3Q6T4P5 718 aa19.52■□□□□ 0.72
SS18-201ENST00000269137 POLR3GLQ9BT43 218 aa19.52■□□□□ 0.72
SS18-201ENST00000269137 TRAK1Q9UPV9 953 aa19.52■□□□□ 0.72
SS18-201ENST00000269137 CENPJQ9HC77 1338 aaPredicted RBP19.52■□□□□ 0.71
SS18-201ENST00000269137 THEMISQ8N1K5 641 aaPredicted RBP19.51■□□□□ 0.71
SS18-201ENST00000269137 ARHGAP23Q9P227 1491 aa19.51■□□□□ 0.71
SS18-201ENST00000269137 SETD1AO15047 1707 aaKnown RBP19.5■□□□□ 0.71
SS18-201ENST00000269137 NRXN3Q9Y4C0 1643 aa19.5■□□□□ 0.71
SS18-201ENST00000269137 PTPRMP28827 1452 aa19.49■□□□□ 0.71
SS18-201ENST00000269137 YTHDC2Q9H6S0 1430 aaKnown RBP19.49■□□□□ 0.71
SS18-201ENST00000269137 ARHGEF28Q8N1W1 1705 aaKnown RBP19.49■□□□□ 0.71
SS18-201ENST00000269137 CEP170BQ9Y4F5 1589 aaPredicted RBP19.48■□□□□ 0.71
SS18-201ENST00000269137 PLEKHG1Q9ULL1 1385 aa19.47■□□□□ 0.71
SS18-201ENST00000269137 LTKP29376 864 aa19.46■□□□□ 0.71
SS18-201ENST00000269137 EID1Q9Y6B2 187 aa19.46■□□□□ 0.71
SS18-201ENST00000269137 TXNDC2Q86VQ3 553 aa19.46■□□□□ 0.71
SS18-201ENST00000269137 QRICH2Q9H0J4 1663 aa19.45■□□□□ 0.7
SS18-201ENST00000269137 CCER2I3L3R5 266 aa19.45■□□□□ 0.7
SS18-201ENST00000269137 ZNF142P52746 1687 aaPredicted RBP19.45■□□□□ 0.7
SS18-201ENST00000269137 LRPPRCP42704 1394 aaKnown RBP19.45■□□□□ 0.7
SS18-201ENST00000269137 SENP3Q9H4L4 574 aaPredicted RBP19.44■□□□□ 0.7
SS18-201ENST00000269137 DLC1Q96QB1 1528 aa19.43■□□□□ 0.7
SS18-201ENST00000269137 STK26Q9P289 416 aa19.43■□□□□ 0.7
SS18-201ENST00000269137 ABCC11Q96J66 1382 aa19.43■□□□□ 0.7
SS18-201ENST00000269137 ADAMTS13Q76LX8 1427 aa19.42■□□□□ 0.7
SS18-201ENST00000269137 MED14O60244 1454 aa19.41■□□□□ 0.7
SS18-201ENST00000269137 METP08581 1390 aa19.41■□□□□ 0.7
SS18-201ENST00000269137 PUS7Q96PZ0 661 aaKnown RBP19.4■□□□□ 0.7
SS18-201ENST00000269137 PRKRIP1Q9H875 184 aaPredicted RBP19.4■□□□□ 0.7
SS18-201ENST00000269137 SIRT1Q96EB6 747 aa19.39■□□□□ 0.69
SS18-201ENST00000269137 BCANQ96GW7 911 aa19.39■□□□□ 0.69
SS18-201ENST00000269137 TECPR2O15040 1411 aa19.38■□□□□ 0.69
SS18-201ENST00000269137 PER1O15534 1290 aaPredicted RBP19.37■□□□□ 0.69
SS18-201ENST00000269137 PRAM1Q96QH2 718 aa19.37■□□□□ 0.69
SS18-201ENST00000269137 EVC2Q86UK5 1308 aa19.37■□□□□ 0.69
SS18-201ENST00000269137 PANK3Q9H999 370 aa19.37■□□□□ 0.69
SS18-201ENST00000269137 POGKQ9P215 609 aa19.37■□□□□ 0.69
SS18-201ENST00000269137 TBX22Q9Y458 520 aa19.37■□□□□ 0.69
SS18-201ENST00000269137 KNDC1Q76NI1 1749 aa19.36■□□□□ 0.69
SS18-201ENST00000269137 MYOM1P52179 1685 aa19.36■□□□□ 0.69
SS18-201ENST00000269137 DIP2AQ14689 1571 aa19.35■□□□□ 0.69
SS18-201ENST00000269137 FAM135BQ49AJ0 1406 aa19.35■□□□□ 0.69
SS18-201ENST00000269137 TULP4Q9NRJ4 1543 aa19.35■□□□□ 0.69
SS18-201ENST00000269137 ANKLE2Q86XL3 938 aa19.33■□□□□ 0.69
SS18-201ENST00000269137 KTN1Q86UP2 1357 aaKnown RBP19.33■□□□□ 0.69
SS18-201ENST00000269137 CPS1P31327 1500 aa19.32■□□□□ 0.68
SS18-201ENST00000269137 SAFB2Q14151 953 aaKnown RBP eCLIP19.32■□□□□ 0.68
SS18-201ENST00000269137 SLC26A8Q96RN1 970 aa19.31■□□□□ 0.68
SS18-201ENST00000269137 RALBP1Q15311 655 aa19.29■□□□□ 0.68
SS18-201ENST00000269137 WAPLQ7Z5K2 1190 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms