RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 ELL2O00472 640 aaPredicted RBP14.42□□□□□ -0.1
VPS33A-201ENST00000267199 CFAP70Q5T0N1 1121 aa14.42□□□□□ -0.1
VPS33A-201ENST00000267199 LMOD2Q6P5Q4 547 aa14.42□□□□□ -0.1
VPS33A-201ENST00000267199 ABCC5O15440 1437 aa14.42□□□□□ -0.1
VPS33A-201ENST00000267199 PTMSP20962 102 aa14.42□□□□□ -0.1
VPS33A-201ENST00000267199 FAM13BQ9NYF5 915 aa14.42□□□□□ -0.1
VPS33A-201ENST00000267199 EVC2Q86UK5 1308 aa14.41□□□□□ -0.1
VPS33A-201ENST00000267199 PANK1Q8TE04 598 aa14.41□□□□□ -0.1
VPS33A-201ENST00000267199 RTF1Q92541 710 aaKnown RBP14.41□□□□□ -0.1
VPS33A-201ENST00000267199 CUL7Q14999 1698 aa14.41□□□□□ -0.1
VPS33A-201ENST00000267199 VGFO15240 615 aaPredicted RBP14.41□□□□□ -0.1
VPS33A-201ENST00000267199 HDGFP51858 240 aaKnown RBP14.41□□□□□ -0.1
VPS33A-201ENST00000267199 FOXD4L6Q3SYB3 417 aaPredicted RBP14.41□□□□□ -0.1
VPS33A-201ENST00000267199 FOXD4L3Q6VB84 417 aaPredicted RBP14.41□□□□□ -0.1
VPS33A-201ENST00000267199 NGEFQ8N5V2 710 aa14.41□□□□□ -0.1
VPS33A-201ENST00000267199 MRC2Q9UBG0 1479 aa14.4□□□□□ -0.1
VPS33A-201ENST00000267199 NCOA1Q15788 1441 aa14.4□□□□□ -0.1
VPS33A-201ENST00000267199 OS9Q13438 667 aaPredicted RBP14.4□□□□□ -0.1
VPS33A-201ENST00000267199 STAC3Q96MF2 364 aa14.4□□□□□ -0.1
VPS33A-201ENST00000267199 SYNJ2O15056 1496 aa14.4□□□□□ -0.1
VPS33A-201ENST00000267199 SNAPC4Q5SXM2 1469 aa14.4□□□□□ -0.1
VPS33A-201ENST00000267199 CHMP5Q9NZZ3 219 aa14.39□□□□□ -0.11
VPS33A-201ENST00000267199 MINK1Q8N4C8 1332 aaPredicted RBP14.39□□□□□ -0.11
VPS33A-201ENST00000267199 IQGAP2Q13576 1575 aa14.39□□□□□ -0.11
VPS33A-201ENST00000267199 ARHGAP5Q13017 1502 aa14.39□□□□□ -0.11
VPS33A-201ENST00000267199 MCCP23508 829 aa14.39□□□□□ -0.11
VPS33A-201ENST00000267199 IFT140Q96RY7 1462 aa14.38□□□□□ -0.11
VPS33A-201ENST00000267199 KIAA0586Q9BVV6 1533 aa14.38□□□□□ -0.11
VPS33A-201ENST00000267199 RUNDC1Q96C34 613 aa14.38□□□□□ -0.11
VPS33A-201ENST00000267199 TMEM132EQ6IEE7 984 aa14.38□□□□□ -0.11
VPS33A-201ENST00000267199 FGD1P98174 961 aa14.37□□□□□ -0.11
VPS33A-201ENST00000267199 FAM43AQ8N2R8 423 aa14.37□□□□□ -0.11
VPS33A-201ENST00000267199 NAP1L2Q9ULW6 460 aaPredicted RBP14.37□□□□□ -0.11
VPS33A-201ENST00000267199 RPRD2Q5VT52 1461 aaKnown RBP14.36□□□□□ -0.11
VPS33A-201ENST00000267199 ANKRD45Q5TZF3 282 aa14.36□□□□□ -0.11
VPS33A-201ENST00000267199 CFAP44Q96MT7 982 aa14.36□□□□□ -0.11
VPS33A-201ENST00000267199 DZIP1LQ8IYY4 767 aaKnown RBP14.36□□□□□ -0.11
VPS33A-201ENST00000267199 NUTM2FA1L443 756 aa14.36□□□□□ -0.11
VPS33A-201ENST00000267199 MTHFSP49914 203 aa14.35□□□□□ -0.11
VPS33A-201ENST00000267199 TCP11L2Q8N4U5 519 aa14.35□□□□□ -0.11
VPS33A-201ENST00000267199 URB2Q14146 1524 aaKnown RBP14.34□□□□□ -0.11
VPS33A-201ENST00000267199 BCAR3O75815 825 aa14.34□□□□□ -0.11
VPS33A-201ENST00000267199 PKNOX2Q96KN3 472 aa14.34□□□□□ -0.11
VPS33A-201ENST00000267199 PLB1Q6P1J6 1458 aa14.34□□□□□ -0.11
VPS33A-201ENST00000267199 C22orf23Q9BZE7 217 aa14.34□□□□□ -0.11
VPS33A-201ENST00000267199 SLC4A10Q6U841 1118 aa14.33□□□□□ -0.11
VPS33A-201ENST00000267199 SYAP1Q96A49 352 aaPredicted RBP14.33□□□□□ -0.11
VPS33A-201ENST00000267199 TRAK2O60296 914 aa14.33□□□□□ -0.12
VPS33A-201ENST00000267199 RIPK4P57078 832 aa14.33□□□□□ -0.12
VPS33A-201ENST00000267199 GGNBP2Q9H3C7 697 aa14.33□□□□□ -0.12
VPS33A-201ENST00000267199 CAMSAP2Q08AD1 1489 aa14.33□□□□□ -0.12
VPS33A-201ENST00000267199 ERBINQ96RT1 1412 aa14.32□□□□□ -0.12
VPS33A-201ENST00000267199 DDX19BQ9UMR2 479 aa14.32□□□□□ -0.12
VPS33A-201ENST00000267199 DIAPH1O60610 1272 aaKnown RBP14.32□□□□□ -0.12
VPS33A-201ENST00000267199 SKOR2Q2VWA4 1001 aaPredicted RBP14.32□□□□□ -0.12
VPS33A-201ENST00000267199 LMOD3Q0VAK6 560 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 MRE11P49959 708 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 LNPKQ9C0E8 428 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 A0A0G2JS52 829 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 SLC12A5Q9H2X9 1139 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 LAMC3Q9Y6N6 1575 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 TRIM6-TRIM34B2RNG4 842 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 CABP2Q9NPB3 220 aa14.31□□□□□ -0.12
VPS33A-201ENST00000267199 STK31Q9BXU1 1019 aa14.3□□□□□ -0.12
VPS33A-201ENST00000267199 GOLGA6L6A8MZA4 724 aa14.29□□□□□ -0.12
VPS33A-201ENST00000267199 ST18O60284 1047 aa14.29□□□□□ -0.12
VPS33A-201ENST00000267199 NRDCO43847 1150 aa14.29□□□□□ -0.12
VPS33A-201ENST00000267199 R3HCC1Q9Y3T6 440 aaKnown RBP14.29□□□□□ -0.12
VPS33A-201ENST00000267199 HMMRO75330 724 aa14.28□□□□□ -0.12
VPS33A-201ENST00000267199 KIAA1211Q6ZU35 1233 aa14.28□□□□□ -0.12
VPS33A-201ENST00000267199 THOC2Q8NI27 1593 aaKnown RBP14.27□□□□□ -0.12
VPS33A-201ENST00000267199 PDE3AQ14432 1141 aa14.26□□□□□ -0.13
VPS33A-201ENST00000267199 RBM10P98175 930 aaKnown RBP14.26□□□□□ -0.13
VPS33A-201ENST00000267199 C20orf194Q5TEA3 1177 aa14.26□□□□□ -0.13
VPS33A-201ENST00000267199 COG3Q96JB2 828 aa14.26□□□□□ -0.13
VPS33A-201ENST00000267199 MAGI1Q96QZ7 1491 aaPredicted RBP14.26□□□□□ -0.13
VPS33A-201ENST00000267199 MCTP1Q6DN14 999 aa14.25□□□□□ -0.13
VPS33A-201ENST00000267199 NASPP49321 788 aaPredicted RBP14.25□□□□□ -0.13
VPS33A-201ENST00000267199 HMOX1P09601 288 aa14.25□□□□□ -0.13
VPS33A-201ENST00000267199 PDZRN3Q9UPQ7 1066 aa14.25□□□□□ -0.13
VPS33A-201ENST00000267199 NGDNQ8NEJ9 315 aaKnown RBP14.25□□□□□ -0.13
VPS33A-201ENST00000267199 UGGT2Q9NYU1 1516 aa14.25□□□□□ -0.13
VPS33A-201ENST00000267199 RNF214Q8ND24 703 aa14.24□□□□□ -0.13
VPS33A-201ENST00000267199 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.24□□□□□ -0.13
VPS33A-201ENST00000267199 SCAPERQ9BY12 1400 aa14.23□□□□□ -0.13
VPS33A-201ENST00000267199 AMPHP49418 695 aa14.23□□□□□ -0.13
VPS33A-201ENST00000267199 LTV1Q96GA3 475 aaPredicted RBP14.23□□□□□ -0.13
VPS33A-201ENST00000267199 CCDC141Q6ZP82 1450 aa14.23□□□□□ -0.13
VPS33A-201ENST00000267199 KIF16BQ96L93 1317 aa14.23□□□□□ -0.13
VPS33A-201ENST00000267199 EXOSC9Q06265 439 aaKnown RBP14.23□□□□□ -0.13
VPS33A-201ENST00000267199 AAMPQ13685 434 aa14.23□□□□□ -0.13
VPS33A-201ENST00000267199 PLEKHH2Q8IVE3 1493 aa14.23□□□□□ -0.13
VPS33A-201ENST00000267199 TSR2Q969E8 191 aaKnown RBP14.22□□□□□ -0.13
VPS33A-201ENST00000267199 GRIN2AQ12879 1464 aa14.22□□□□□ -0.13
VPS33A-201ENST00000267199 ZNF608Q9ULD9 1512 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-201ENST00000267199 SLFN5Q08AF3 891 aa14.22□□□□□ -0.13
VPS33A-201ENST00000267199 RILPL2Q969X0 211 aa14.2□□□□□ -0.14
VPS33A-201ENST00000267199 PHF14O94880 888 aa14.2□□□□□ -0.14
VPS33A-201ENST00000267199 CAVIN1Q6NZI2 390 aaKnown RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms