RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SEPT11Q9NVA2 429 aaKnown RBP16.87■□□□□ 0.29
CCDC88A-201ENST00000263630 SYCP1Q15431 976 aa16.87■□□□□ 0.29
CCDC88A-201ENST00000263630 DHX16O60231 1041 aaKnown RBP16.87■□□□□ 0.29
CCDC88A-201ENST00000263630 ENOX2Q16206 610 aaKnown RBP16.86■□□□□ 0.29
CCDC88A-201ENST00000263630 TXLNBQ8N3L3 684 aa16.86■□□□□ 0.29
CCDC88A-201ENST00000263630 CENPJQ9HC77 1338 aaPredicted RBP16.86■□□□□ 0.29
CCDC88A-201ENST00000263630 CT47B1P0C2W7 299 aaPredicted RBP16.85■□□□□ 0.29
CCDC88A-201ENST00000263630 CHMP5Q9NZZ3 219 aa16.85■□□□□ 0.29
CCDC88A-201ENST00000263630 GBP2P32456 591 aaPredicted RBP16.85■□□□□ 0.29
CCDC88A-201ENST00000263630 DHX8Q14562 1220 aaKnown RBP16.85■□□□□ 0.29
CCDC88A-201ENST00000263630 EEA1Q15075 1411 aa16.85■□□□□ 0.29
CCDC88A-201ENST00000263630 LUC7LQ9NQ29 371 aaKnown RBP16.85■□□□□ 0.29
CCDC88A-201ENST00000263630 VPS37DQ86XT2 251 aa16.84■□□□□ 0.29
CCDC88A-201ENST00000263630 AXDND1Q5T1B0 1012 aaPredicted RBP16.84■□□□□ 0.29
CCDC88A-201ENST00000263630 XBP1P17861 261 aa16.84■□□□□ 0.29
CCDC88A-201ENST00000263630 CCDC73Q6ZRK6 1079 aa16.84■□□□□ 0.29
CCDC88A-201ENST00000263630 MEX3CQ5U5Q3 659 aaKnown RBP16.83■□□□□ 0.28
CCDC88A-201ENST00000263630 TIMELESSQ9UNS1 1208 aa16.83■□□□□ 0.28
CCDC88A-201ENST00000263630 ANKRD62A6NC57 917 aa16.83■□□□□ 0.28
CCDC88A-201ENST00000263630 TERF2IPQ9NYB0 399 aa16.82■□□□□ 0.28
CCDC88A-201ENST00000263630 CCDC39Q9UFE4 941 aa16.82■□□□□ 0.28
CCDC88A-201ENST00000263630 NFXL1Q6ZNB6 911 aa16.82■□□□□ 0.28
CCDC88A-201ENST00000263630 ROCK2O75116 1388 aaKnown RBP16.81■□□□□ 0.28
CCDC88A-201ENST00000263630 TAF3Q5VWG9 929 aa16.81■□□□□ 0.28
CCDC88A-201ENST00000263630 CENPQQ7L2Z9 268 aaPredicted RBP16.81■□□□□ 0.28
CCDC88A-201ENST00000263630 LETM1O95202 739 aaPredicted RBP16.8■□□□□ 0.28
CCDC88A-201ENST00000263630 ROCK1Q13464 1354 aa16.8■□□□□ 0.28
CCDC88A-201ENST00000263630 FOXD4L6Q3SYB3 417 aaPredicted RBP16.8■□□□□ 0.28
CCDC88A-201ENST00000263630 FOXD4L3Q6VB84 417 aaPredicted RBP16.8■□□□□ 0.28
CCDC88A-201ENST00000263630 FAM161AQ3B820 660 aa16.79■□□□□ 0.28
CCDC88A-201ENST00000263630 SAFB2Q14151 953 aaKnown RBP eCLIP16.79■□□□□ 0.28
CCDC88A-201ENST00000263630 PDE3BQ13370 1112 aa16.79■□□□□ 0.28
CCDC88A-201ENST00000263630 FILIP1LQ4L180 1135 aa16.79■□□□□ 0.28
CCDC88A-201ENST00000263630 ANO2Q9NQ90 1003 aa16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 NUCB2P80303 420 aa16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 DEF6Q9H4E7 631 aa16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 MAGEC2Q9UBF1 373 aaPredicted RBP16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 CCNB3Q8WWL7 1395 aa16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 DESP17661 470 aa16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 FEZ1Q99689 392 aa16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 PDILTQ8N807 584 aa16.78■□□□□ 0.28
CCDC88A-201ENST00000263630 EIF3JO75822 258 aaKnown RBP16.77■□□□□ 0.28
CCDC88A-201ENST00000263630 PIP4K2AP48426 406 aaPredicted RBP16.77■□□□□ 0.28
CCDC88A-201ENST00000263630 PPM1EQ8WY54 764 aa16.77■□□□□ 0.28
CCDC88A-201ENST00000263630 KIF7Q2M1P5 1343 aa16.77■□□□□ 0.28
CCDC88A-201ENST00000263630 IQCEQ6IPM2 695 aa16.77■□□□□ 0.28
CCDC88A-201ENST00000263630 TMEM132AQ24JP5 1023 aa16.76■□□□□ 0.27
CCDC88A-201ENST00000263630 ANKRD45Q5TZF3 282 aa16.76■□□□□ 0.27
CCDC88A-201ENST00000263630 NF2P35240 595 aa16.76■□□□□ 0.27
CCDC88A-201ENST00000263630 STK26Q9P289 416 aa16.76■□□□□ 0.27
CCDC88A-201ENST00000263630 FHAD1B1AJZ9 1412 aa16.75■□□□□ 0.27
CCDC88A-201ENST00000263630 AMPHP49418 695 aa16.75■□□□□ 0.27
CCDC88A-201ENST00000263630 CCDC91Q7Z6B0 441 aa16.75■□□□□ 0.27
CCDC88A-201ENST00000263630 ZNHIT6Q9NWK9 470 aaKnown RBP16.75■□□□□ 0.27
CCDC88A-201ENST00000263630 SMC3Q9UQE7 1217 aa16.75■□□□□ 0.27
CCDC88A-201ENST00000263630 SKIDA1Q1XH10 827 aa16.75■□□□□ 0.27
CCDC88A-201ENST00000263630 HMGN5P82970 282 aaKnown RBP16.75■□□□□ 0.27
CCDC88A-201ENST00000263630 TXLNAP40222 546 aa16.74■□□□□ 0.27
CCDC88A-201ENST00000263630 STAMBPO95630 424 aa16.74■□□□□ 0.27
CCDC88A-201ENST00000263630 GIMAP7Q8NHV1 300 aa16.74■□□□□ 0.27
CCDC88A-201ENST00000263630 CCDC97Q96F63 343 aaPredicted RBP16.74■□□□□ 0.27
CCDC88A-201ENST00000263630 SLC26A8Q96RN1 970 aa16.74■□□□□ 0.27
CCDC88A-201ENST00000263630 C1orf141Q5JVX7 400 aa16.74■□□□□ 0.27
CCDC88A-201ENST00000263630 TRHP20396 242 aaPredicted RBP16.73■□□□□ 0.27
CCDC88A-201ENST00000263630 CEP162Q5TB80 1403 aa16.73■□□□□ 0.27
CCDC88A-201ENST00000263630 KIF3BO15066 747 aa16.73■□□□□ 0.27
CCDC88A-201ENST00000263630 CCAR1Q8IX12 1150 aaKnown RBP16.72■□□□□ 0.27
CCDC88A-201ENST00000263630 C9orf78Q9NZ63 289 aaPredicted RBP16.72■□□□□ 0.27
CCDC88A-201ENST00000263630 SPATA24Q86W54 205 aa16.71■□□□□ 0.27
CCDC88A-201ENST00000263630 IFIT2P09913 472 aaKnown RBP16.71■□□□□ 0.27
CCDC88A-201ENST00000263630 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.71■□□□□ 0.27
CCDC88A-201ENST00000263630 CDK5RAP3Q96JB5 506 aa16.71■□□□□ 0.27
CCDC88A-201ENST00000263630 TRIM21P19474 475 aaKnown RBP16.71■□□□□ 0.27
CCDC88A-201ENST00000263630 HSP90AB4PQ58FF6 505 aa16.71■□□□□ 0.27
CCDC88A-201ENST00000263630 RALYLQ86SE5 291 aaKnown RBP16.71■□□□□ 0.27
CCDC88A-201ENST00000263630 ERLIN1O75477 346 aa16.71■□□□□ 0.26
CCDC88A-201ENST00000263630 CAVIN1Q6NZI2 390 aaKnown RBP16.7■□□□□ 0.26
CCDC88A-201ENST00000263630 TTLL5Q6EMB2 1281 aa16.7■□□□□ 0.26
CCDC88A-201ENST00000263630 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.7■□□□□ 0.26
CCDC88A-201ENST00000263630 CCDC181Q5TID7 509 aa16.7■□□□□ 0.26
CCDC88A-201ENST00000263630 NASPP49321 788 aaPredicted RBP16.69■□□□□ 0.26
CCDC88A-201ENST00000263630 VPS37CA5D8V6 355 aaPredicted RBP16.69■□□□□ 0.26
CCDC88A-201ENST00000263630 CCDC112Q8NEF3 446 aa16.69■□□□□ 0.26
CCDC88A-201ENST00000263630 CFAP57Q96MR6 1250 aa16.69■□□□□ 0.26
CCDC88A-201ENST00000263630 FBXW7Q969H0 707 aa16.68■□□□□ 0.26
CCDC88A-201ENST00000263630 SDF4Q9BRK5 362 aa16.68■□□□□ 0.26
CCDC88A-201ENST00000263630 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.68■□□□□ 0.26
CCDC88A-201ENST00000263630 CLUAP1Q96AJ1 413 aa16.68■□□□□ 0.26
CCDC88A-201ENST00000263630 CEP63Q96MT8 703 aa16.68■□□□□ 0.26
CCDC88A-201ENST00000263630 WASHC2AQ641Q2 1341 aa16.67■□□□□ 0.26
CCDC88A-201ENST00000263630 DDX58O95786 925 aaKnown RBP16.67■□□□□ 0.26
CCDC88A-201ENST00000263630 INTS3Q68E01 1043 aaKnown RBP16.67■□□□□ 0.26
CCDC88A-201ENST00000263630 NINLQ9Y2I6 1382 aa16.67■□□□□ 0.26
CCDC88A-201ENST00000263630 ERC2O15083 957 aa16.67■□□□□ 0.26
CCDC88A-201ENST00000263630 TTC5Q8N0Z6 440 aa16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 NGDNQ8NEJ9 315 aaKnown RBP16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 KINO60870 393 aaKnown RBP16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 SART3Q15020 963 aaKnown RBP16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 TAX1BP1Q86VP1 789 aa16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 STIM1Q13586 685 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms