RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 EXOC6Q8TAG9 804 aa10.62□□□□□ -0.71
LDB3-201ENST00000263066 CROCC2H7BZ55 1655 aa10.62□□□□□ -0.71
LDB3-201ENST00000263066 NEUROD2Q15784 382 aa10.62□□□□□ -0.71
LDB3-201ENST00000263066 ZNF771Q7L3S4 317 aaPredicted RBP10.62□□□□□ -0.71
LDB3-201ENST00000263066 MINK1Q8N4C8 1332 aaPredicted RBP10.62□□□□□ -0.71
LDB3-201ENST00000263066 IPO4Q8TEX9 1081 aaKnown RBP10.61□□□□□ -0.71
LDB3-201ENST00000263066 PANK2Q9BZ23 570 aa10.61□□□□□ -0.71
LDB3-201ENST00000263066 CDC42BPBQ9Y5S2 1711 aa10.6□□□□□ -0.71
LDB3-201ENST00000263066 RAPGEF6Q8TEU7 1601 aa10.6□□□□□ -0.71
LDB3-201ENST00000263066 HSPA5P11021 654 aaKnown RBP10.6□□□□□ -0.71
LDB3-201ENST00000263066 PTMAP06454 111 aaKnown RBP10.6□□□□□ -0.71
LDB3-201ENST00000263066 TXNDC2Q86VQ3 553 aa10.6□□□□□ -0.71
LDB3-201ENST00000263066 CGNQ9P2M7 1197 aaKnown RBP10.6□□□□□ -0.71
LDB3-201ENST00000263066 CFAP70Q5T0N1 1121 aa10.59□□□□□ -0.71
LDB3-201ENST00000263066 NUDCQ9Y266 331 aa10.59□□□□□ -0.71
LDB3-201ENST00000263066 GCC2Q8IWJ2 1684 aa10.58□□□□□ -0.72
LDB3-201ENST00000263066 C9orf84Q5VXU9 1444 aa10.58□□□□□ -0.72
LDB3-201ENST00000263066 ADGRL1O94910 1474 aa10.58□□□□□ -0.72
LDB3-201ENST00000263066 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.58□□□□□ -0.72
LDB3-201ENST00000263066 SKAP1Q86WV1 359 aa10.58□□□□□ -0.72
LDB3-201ENST00000263066 ST20-MTHFSA0A0A6YYL1 179 aa10.58□□□□□ -0.72
LDB3-201ENST00000263066 NUTM2GQ5VZR2 741 aa10.58□□□□□ -0.72
LDB3-201ENST00000263066 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.58□□□□□ -0.72
LDB3-201ENST00000263066 MS4A1P11836 297 aa10.58□□□□□ -0.72
LDB3-201ENST00000263066 FANCAO15360 1455 aa10.57□□□□□ -0.72
LDB3-201ENST00000263066 NBPF1Q3BBV0 1214 aa10.57□□□□□ -0.72
LDB3-201ENST00000263066 GTF2E1P29083 439 aaPredicted RBP10.57□□□□□ -0.72
LDB3-201ENST00000263066 MRE11P49959 708 aa10.56□□□□□ -0.72
LDB3-201ENST00000263066 STAC3Q96MF2 364 aa10.56□□□□□ -0.72
LDB3-201ENST00000263066 XRCC6P12956 609 aaKnown RBP eCLIP10.56□□□□□ -0.72
LDB3-201ENST00000263066 CCDC144AA2RUR9 1427 aa10.56□□□□□ -0.72
LDB3-201ENST00000263066 ROCK2O75116 1388 aaKnown RBP10.56□□□□□ -0.72
LDB3-201ENST00000263066 PTPN23Q9H3S7 1636 aa10.56□□□□□ -0.72
LDB3-201ENST00000263066 BRD2P25440 801 aaKnown RBP10.56□□□□□ -0.72
LDB3-201ENST00000263066 CBX1P83916 185 aa10.56□□□□□ -0.72
LDB3-201ENST00000263066 TCOF1Q13428 1488 aaKnown RBP10.55□□□□□ -0.72
LDB3-201ENST00000263066 HDGFP51858 240 aaKnown RBP10.55□□□□□ -0.72
LDB3-201ENST00000263066 PPP4R3BQ5MIZ7 849 aa10.55□□□□□ -0.72
LDB3-201ENST00000263066 FTSJ3Q8IY81 847 aaKnown RBP10.55□□□□□ -0.72
LDB3-201ENST00000263066 ZFP91Q96JP5 570 aaPredicted RBP10.55□□□□□ -0.72
LDB3-201ENST00000263066 ZBED9Q6R2W3 1325 aa10.55□□□□□ -0.72
LDB3-201ENST00000263066 UQCRHLA0A096LP55 91 aa10.55□□□□□ -0.72
LDB3-201ENST00000263066 UQCRHP07919 91 aa10.55□□□□□ -0.72
LDB3-201ENST00000263066 MTERF4Q7Z6M4 381 aaKnown RBP10.55□□□□□ -0.72
LDB3-201ENST00000263066 AKNAQ7Z591 1439 aa10.55□□□□□ -0.72
LDB3-201ENST00000263066 PATL2C9JE40 543 aaKnown RBP10.54□□□□□ -0.72
LDB3-201ENST00000263066 PIP4K2BP78356 416 aa10.54□□□□□ -0.72
LDB3-201ENST00000263066 XPCQ01831 940 aaPredicted RBP10.54□□□□□ -0.72
LDB3-201ENST00000263066 LTV1Q96GA3 475 aaPredicted RBP10.54□□□□□ -0.72
LDB3-201ENST00000263066 HECW1Q76N89 1606 aa10.54□□□□□ -0.72
LDB3-201ENST00000263066 TRAPPC8Q9Y2L5 1435 aa10.54□□□□□ -0.72
LDB3-201ENST00000263066 IRX3P78415 501 aaPredicted RBP10.54□□□□□ -0.72
LDB3-201ENST00000263066 IDI1Q13907 227 aa10.53□□□□□ -0.72
LDB3-201ENST00000263066 SMAP1Q8IYB5 467 aaPredicted RBP10.53□□□□□ -0.72
LDB3-201ENST00000263066 KNSTRNQ9Y448 316 aa10.53□□□□□ -0.72
LDB3-201ENST00000263066 NGDNQ8NEJ9 315 aaKnown RBP10.53□□□□□ -0.72
LDB3-201ENST00000263066 IGSF3O75054 1194 aa10.52□□□□□ -0.73
LDB3-201ENST00000263066 U2SURPO15042 1029 aaKnown RBP10.52□□□□□ -0.73
LDB3-201ENST00000263066 CERS3Q8IU89 383 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 PRDM4Q9UKN5 801 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 ABCC10Q5T3U5 1492 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 CCDC184Q52MB2 194 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 PMFBP1Q8TBY8 1022 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 PLEKHH2Q8IVE3 1493 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 DAPK1P53355 1430 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 FAM161AQ3B820 660 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 RCAN3Q9UKA8 241 aa10.51□□□□□ -0.73
LDB3-201ENST00000263066 CCDC9Q9Y3X0 531 aaKnown RBP10.51□□□□□ -0.73
LDB3-201ENST00000263066 GPATCH8Q9UKJ3 1502 aaKnown RBP10.51□□□□□ -0.73
LDB3-201ENST00000263066 GRPEL1Q9HAV7 217 aa10.5□□□□□ -0.73
LDB3-201ENST00000263066 PLIN1O60240 522 aa10.5□□□□□ -0.73
LDB3-201ENST00000263066 ABCC5O15440 1437 aa10.5□□□□□ -0.73
LDB3-201ENST00000263066 VGFO15240 615 aaPredicted RBP10.5□□□□□ -0.73
LDB3-201ENST00000263066 TRAK2O60296 914 aa10.49□□□□□ -0.73
LDB3-201ENST00000263066 CAMSAP2Q08AD1 1489 aa10.49□□□□□ -0.73
LDB3-201ENST00000263066 WDR7Q9Y4E6 1490 aa10.49□□□□□ -0.73
LDB3-201ENST00000263066 TTC37Q6PGP7 1564 aa10.49□□□□□ -0.73
LDB3-201ENST00000263066 TMF1P82094 1093 aa10.49□□□□□ -0.73
LDB3-201ENST00000263066 CABP2Q9NPB3 220 aa10.49□□□□□ -0.73
LDB3-201ENST00000263066 EHBP1L1Q8N3D4 1523 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 GOLGA6L22H0YM25 854 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 DNMT1P26358 1616 aaKnown RBP10.48□□□□□ -0.73
LDB3-201ENST00000263066 PTMSP20962 102 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 NBPF8Q3BBV2 869 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 WAPLQ7Z5K2 1190 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 KCNJ4P48050 445 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 PROSER2Q86WR7 435 aaPredicted RBP10.48□□□□□ -0.73
LDB3-201ENST00000263066 TSPOAP1O95153 1857 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 ABCC2Q92887 1545 aa10.48□□□□□ -0.73
LDB3-201ENST00000263066 RRP1P56182 461 aaKnown RBP10.46□□□□□ -0.73
LDB3-201ENST00000263066 CFAP65Q6ZU64 1925 aaKnown RBP10.46□□□□□ -0.73
LDB3-201ENST00000263066 TRERF1Q96PN7 1200 aa10.46□□□□□ -0.73
LDB3-201ENST00000263066 WDR43Q15061 677 aaKnown RBP eCLIP10.46□□□□□ -0.74
LDB3-201ENST00000263066 WWC1Q8IX03 1113 aa10.45□□□□□ -0.74
LDB3-201ENST00000263066 ZNF830Q96NB3 372 aaPredicted RBP10.45□□□□□ -0.74
LDB3-201ENST00000263066 NAIPQ13075 1403 aa10.45□□□□□ -0.74
LDB3-201ENST00000263066 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.44□□□□□ -0.74
LDB3-201ENST00000263066 PRAM1Q96QH2 718 aa10.44□□□□□ -0.74
LDB3-201ENST00000263066 SAMD9LQ8IVG5 1584 aa10.44□□□□□ -0.74
LDB3-201ENST00000263066 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms