RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 GPRASP1Q5JY77 1395 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 NEXNQ0ZGT2 675 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 PNISRQ8TF01 805 aaKnown RBP5.35□□□□□ -1.55
VPS13C-202ENST00000261517 DUOX2Q9NRD8 1548 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 REC8O95072 547 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 PSME1Q06323 249 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 MFAP1P55081 439 aaKnown RBP5.35□□□□□ -1.55
VPS13C-202ENST00000261517 GNAI1P63096 354 aa5.34□□□□□ -1.55
VPS13C-202ENST00000261517 AMOTL1Q8IY63 956 aa5.34□□□□□ -1.55
VPS13C-202ENST00000261517 ADAMTS12P58397 1594 aa5.34□□□□□ -1.55
VPS13C-202ENST00000261517 FRAT1Q92837 279 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-202ENST00000261517 ERBINQ96RT1 1412 aa5.34□□□□□ -1.55
VPS13C-202ENST00000261517 SALL2Q9Y467 1007 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-202ENST00000261517 LAS1LQ9Y4W2 734 aaKnown RBP5.34□□□□□ -1.56
VPS13C-202ENST00000261517 HIP1O00291 1037 aa5.34□□□□□ -1.56
VPS13C-202ENST00000261517 GNL2Q13823 731 aaKnown RBP5.33□□□□□ -1.56
VPS13C-202ENST00000261517 ZKSCAN2Q63HK3 967 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 CPLX2Q6PUV4 134 aaKnown RBP5.33□□□□□ -1.56
VPS13C-202ENST00000261517 THEMISQ8N1K5 641 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-202ENST00000261517 RUNDC1Q96C34 613 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 CSB-PGBD3P0DP91 1061 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 LMOD2Q6P5Q4 547 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 HOOK1Q9UJC3 728 aaKnown RBP5.33□□□□□ -1.56
VPS13C-202ENST00000261517 CAMSAP2Q08AD1 1489 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 ZBTB7CA1YPR0 619 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 GAS2L2Q8NHY3 880 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 RUSC2Q8N2Y8 1516 aa5.33□□□□□ -1.56
VPS13C-202ENST00000261517 RNF20Q5VTR2 975 aa5.32□□□□□ -1.56
VPS13C-202ENST00000261517 WDR62O43379 1518 aa5.32□□□□□ -1.56
VPS13C-202ENST00000261517 ABCC11Q96J66 1382 aa5.32□□□□□ -1.56
VPS13C-202ENST00000261517 PUS7Q96PZ0 661 aaKnown RBP5.32□□□□□ -1.56
VPS13C-202ENST00000261517 ARHGEF12Q9NZN5 1544 aa5.32□□□□□ -1.56
VPS13C-202ENST00000261517 MCM2P49736 904 aa5.32□□□□□ -1.56
VPS13C-202ENST00000261517 MSNP26038 577 aaKnown RBP5.32□□□□□ -1.56
VPS13C-202ENST00000261517 TAF7LQ5H9L4 462 aa5.32□□□□□ -1.56
VPS13C-202ENST00000261517 ERC2O15083 957 aa5.32□□□□□ -1.56
VPS13C-202ENST00000261517 DIAPH1O60610 1272 aaKnown RBP5.31□□□□□ -1.56
VPS13C-202ENST00000261517 NCOA1Q15788 1441 aa5.31□□□□□ -1.56
VPS13C-202ENST00000261517 ITPRIPQ8IWB1 547 aa5.31□□□□□ -1.56
VPS13C-202ENST00000261517 NOL10Q9BSC4 688 aaKnown RBP5.31□□□□□ -1.56
VPS13C-202ENST00000261517 GORABQ5T7V8 394 aa5.31□□□□□ -1.56
VPS13C-202ENST00000261517 KIF7Q2M1P5 1343 aa5.31□□□□□ -1.56
VPS13C-202ENST00000261517 PRKRIP1Q9H875 184 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-202ENST00000261517 TTC5Q8N0Z6 440 aa5.31□□□□□ -1.56
VPS13C-202ENST00000261517 A0A0G2JS52 829 aa5.31□□□□□ -1.56
VPS13C-202ENST00000261517 ERC1Q8IUD2 1116 aa5.31□□□□□ -1.56
VPS13C-202ENST00000261517 LRPPRCP42704 1394 aaKnown RBP5.31□□□□□ -1.56
VPS13C-202ENST00000261517 RTEL1-TNFRSF6BF6WH68 1400 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 ATF3P18847 181 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 TPM3P06753 285 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 PRKCSHP14314 528 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-202ENST00000261517 TEFQ10587 303 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 STK26Q9P289 416 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 BCL11AQ9H165 835 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 PANK3Q9H999 370 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 ISY1Q9ULR0 285 aaKnown RBP5.3□□□□□ -1.56
VPS13C-202ENST00000261517 TPM2P07951 284 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 KIAA0556O60303 1618 aa5.3□□□□□ -1.56
VPS13C-202ENST00000261517 PAK3O75914 559 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-202ENST00000261517 ST20-MTHFSA0A0A6YYL1 179 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 FAM161AQ3B820 660 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 CCDC47Q96A33 483 aaKnown RBP5.29□□□□□ -1.56
VPS13C-202ENST00000261517 GOLGA6L1Q8N7Z2 621 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 WDR63Q8IWG1 891 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 FAM69CQ0P6D2 419 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 ADGRL1O94910 1474 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 NEUROD2Q15784 382 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 URB2Q14146 1524 aaKnown RBP5.29□□□□□ -1.56
VPS13C-202ENST00000261517 MLECQ14165 292 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 PDE3AQ14432 1141 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 SYNE3Q6ZMZ3 975 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 DENND4BO75064 1496 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-202ENST00000261517 ZKSCAN1P17029 563 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-202ENST00000261517 DNTTIP2Q5QJE6 756 aaKnown RBP5.29□□□□□ -1.56
VPS13C-202ENST00000261517 DHX29Q7Z478 1369 aaKnown RBP5.29□□□□□ -1.56
VPS13C-202ENST00000261517 ABCA5Q8WWZ7 1642 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 ZNF518AQ6AHZ1 1483 aa5.29□□□□□ -1.56
VPS13C-202ENST00000261517 TCOF1Q13428 1488 aaKnown RBP5.28□□□□□ -1.56
VPS13C-202ENST00000261517 MYO5CQ9NQX4 1742 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 GNAI3P08754 354 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 TPM1P09493 284 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 ARXQ96QS3 562 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 SRCIN1Q9C0H9 1055 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 CD109Q6YHK3 1445 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 LETM1O95202 739 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-202ENST00000261517 ABCC10Q5T3U5 1492 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 ANKRD20A12PQ8NF67 263 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 RGS3P49796 1198 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 DMRT2Q9Y5R5 561 aa5.28□□□□□ -1.56
VPS13C-202ENST00000261517 RRP1P56182 461 aaKnown RBP5.27□□□□□ -1.57
VPS13C-202ENST00000261517 NUCB2P80303 420 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 GCC2Q8IWJ2 1684 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 PLEKHO1Q53GL0 409 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-202ENST00000261517 NAIPQ13075 1403 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 AKAP17AQ02040 695 aaKnown RBP5.27□□□□□ -1.57
VPS13C-202ENST00000261517 PSMA5P28066 241 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 NKTRP30414 1462 aaKnown RBP5.27□□□□□ -1.57
VPS13C-202ENST00000261517 SOS1Q07889 1333 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-202ENST00000261517 PDCP20941 246 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 INTS3Q68E01 1043 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms