RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PPP4R2Q9NY27 417 aa17.53■□□□□ 0.4
LDLR-201ENST00000252444 ATP10AO60312 1499 aa17.53■□□□□ 0.4
LDLR-201ENST00000252444 DDRGK1Q96HY6 314 aa17.52■□□□□ 0.4
LDLR-201ENST00000252444 SENP3Q9H4L4 574 aaPredicted RBP17.51■□□□□ 0.39
LDLR-201ENST00000252444 ADCY10Q96PN6 1610 aa17.51■□□□□ 0.39
LDLR-201ENST00000252444 TNNT2P45379 298 aaPredicted RBP17.51■□□□□ 0.39
LDLR-201ENST00000252444 TNRQ92752 1358 aa17.51■□□□□ 0.39
LDLR-201ENST00000252444 MAST1Q9Y2H9 1570 aa17.5■□□□□ 0.39
LDLR-201ENST00000252444 GCC2Q8IWJ2 1684 aa17.5■□□□□ 0.39
LDLR-201ENST00000252444 MINK1Q8N4C8 1332 aaPredicted RBP17.49■□□□□ 0.39
LDLR-201ENST00000252444 AEBP2Q6ZN18 517 aaPredicted RBP17.48■□□□□ 0.39
LDLR-201ENST00000252444 GOLGA2Q08379 1002 aa17.48■□□□□ 0.39
LDLR-201ENST00000252444 SMG6Q86US8 1419 aaKnown RBP17.47■□□□□ 0.39
LDLR-201ENST00000252444 SCAF11Q99590 1463 aaKnown RBP17.47■□□□□ 0.39
LDLR-201ENST00000252444 PRKRIP1Q9H875 184 aaPredicted RBP17.47■□□□□ 0.39
LDLR-201ENST00000252444 PREX2Q70Z35 1606 aa17.47■□□□□ 0.39
LDLR-201ENST00000252444 AAMPQ13685 434 aa17.46■□□□□ 0.39
LDLR-201ENST00000252444 ZFYVE16Q7Z3T8 1539 aa17.46■□□□□ 0.39
LDLR-201ENST00000252444 NSD2O96028 1365 aa17.46■□□□□ 0.39
LDLR-201ENST00000252444 STK31Q9BXU1 1019 aa17.46■□□□□ 0.39
LDLR-201ENST00000252444 LAS1LQ9Y4W2 734 aaKnown RBP17.46■□□□□ 0.39
LDLR-201ENST00000252444 KIF7Q2M1P5 1343 aa17.45■□□□□ 0.38
LDLR-201ENST00000252444 ZCCHC11Q5TAX3 1644 aaKnown RBP17.45■□□□□ 0.38
LDLR-201ENST00000252444 NUTM2DQ5VT03 806 aaPredicted RBP17.45■□□□□ 0.38
LDLR-201ENST00000252444 PUS7Q96PZ0 661 aaKnown RBP17.45■□□□□ 0.38
LDLR-201ENST00000252444 BECN1Q14457 450 aa17.45■□□□□ 0.38
LDLR-201ENST00000252444 A0A0G2JS52 829 aa17.44■□□□□ 0.38
LDLR-201ENST00000252444 DIAPH1O60610 1272 aaKnown RBP17.44■□□□□ 0.38
LDLR-201ENST00000252444 E9PSI1 815 aa17.43■□□□□ 0.38
LDLR-201ENST00000252444 CLASP1Q7Z460 1538 aa17.43■□□□□ 0.38
LDLR-201ENST00000252444 HSP90AA1P07900 732 aaKnown RBP17.43■□□□□ 0.38
LDLR-201ENST00000252444 TRAPPC8Q9Y2L5 1435 aa17.43■□□□□ 0.38
LDLR-201ENST00000252444 LRPPRCP42704 1394 aaKnown RBP17.42■□□□□ 0.38
LDLR-201ENST00000252444 NEUROD2Q15784 382 aa17.42■□□□□ 0.38
LDLR-201ENST00000252444 RALGAPBQ86X10 1494 aa17.42■□□□□ 0.38
LDLR-201ENST00000252444 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.42■□□□□ 0.383e-7■■■□□ 14.7
LDLR-201ENST00000252444 C1orf141Q5JVX7 400 aa17.41■□□□□ 0.38
LDLR-201ENST00000252444 ZBED9Q6R2W3 1325 aa17.4■□□□□ 0.38
LDLR-201ENST00000252444 CFAP70Q5T0N1 1121 aa17.4■□□□□ 0.38
LDLR-201ENST00000252444 PROSER2Q86WR7 435 aaPredicted RBP17.4■□□□□ 0.38
LDLR-201ENST00000252444 PMFBP1Q8TBY8 1022 aa17.39■□□□□ 0.37
LDLR-201ENST00000252444 KDM5DQ9BY66 1539 aa17.38■□□□□ 0.37
LDLR-201ENST00000252444 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.38■□□□□ 0.37
LDLR-201ENST00000252444 MLH3Q9UHC1 1453 aa17.37■□□□□ 0.37
LDLR-201ENST00000252444 ABCC1P33527 1531 aa17.37■□□□□ 0.37
LDLR-201ENST00000252444 RUNDC1Q96C34 613 aa17.37■□□□□ 0.37
LDLR-201ENST00000252444 MAGI3Q5TCQ9 1506 aa17.37■□□□□ 0.37
LDLR-201ENST00000252444 HMMRO75330 724 aa17.37■□□□□ 0.37
LDLR-201ENST00000252444 RCAN3Q9UKA8 241 aa17.37■□□□□ 0.37
LDLR-201ENST00000252444 PRAM1Q96QH2 718 aa17.35■□□□□ 0.37
LDLR-201ENST00000252444 RWDD1Q9H446 243 aaPredicted RBP17.35■□□□□ 0.37
LDLR-201ENST00000252444 ANP32EQ9BTT0 268 aa17.35■□□□□ 0.37
LDLR-201ENST00000252444 UHRF1BP1Q6BDS2 1440 aa17.34■□□□□ 0.37
LDLR-201ENST00000252444 C14orf93Q9H972 538 aaKnown RBP17.34■□□□□ 0.37
LDLR-201ENST00000252444 PLXNC1O60486 1568 aa17.33■□□□□ 0.36
LDLR-201ENST00000252444 EVA1CP58658 441 aa17.32■□□□□ 0.36
LDLR-201ENST00000252444 HECW2Q9P2P5 1572 aa17.32■□□□□ 0.36
LDLR-201ENST00000252444 SHROOM2Q13796 1616 aa17.32■□□□□ 0.36
LDLR-201ENST00000252444 GAS2L2Q8NHY3 880 aa17.31■□□□□ 0.36
LDLR-201ENST00000252444 FRAT1Q92837 279 aaPredicted RBP17.31■□□□□ 0.36
LDLR-201ENST00000252444 KCNH5Q8NCM2 988 aa17.31■□□□□ 0.36
LDLR-201ENST00000252444 SUPT16HQ9Y5B9 1047 aaKnown RBP17.31■□□□□ 0.36
LDLR-201ENST00000252444 NPHP1O15259 732 aa17.31■□□□□ 0.36
LDLR-201ENST00000252444 OS9Q13438 667 aaPredicted RBP17.31■□□□□ 0.36
LDLR-201ENST00000252444 CDK19Q9BWU1 502 aa17.31■□□□□ 0.36
LDLR-201ENST00000252444 SOX12O15370 315 aa17.3■□□□□ 0.36
LDLR-201ENST00000252444 NOS1P29475 1434 aa17.3■□□□□ 0.36
LDLR-201ENST00000252444 PLEKHG5O94827 1062 aa17.3■□□□□ 0.36
LDLR-201ENST00000252444 CT47B1P0C2W7 299 aaPredicted RBP17.3■□□□□ 0.36
LDLR-201ENST00000252444 GNAI1P63096 354 aa17.3■□□□□ 0.36
LDLR-201ENST00000252444 RIMS2Q9UQ26 1411 aa17.29■□□□□ 0.36
LDLR-201ENST00000252444 PTPRKQ15262 1439 aa17.29■□□□□ 0.36
LDLR-201ENST00000252444 GPATCH3Q96I76 525 aa17.28■□□□□ 0.36
LDLR-201ENST00000252444 WWC1Q8IX03 1113 aa17.28■□□□□ 0.36
LDLR-201ENST00000252444 PNISRQ8TF01 805 aaKnown RBP17.28■□□□□ 0.36
LDLR-201ENST00000252444 TMX4Q9H1E5 349 aaPredicted RBP17.28■□□□□ 0.36
LDLR-201ENST00000252444 MCCP23508 829 aa17.28■□□□□ 0.36
LDLR-201ENST00000252444 SAMD9LQ8IVG5 1584 aa17.27■□□□□ 0.35
LDLR-201ENST00000252444 CCDC61Q9Y6R9 512 aa17.27■□□□□ 0.35
LDLR-201ENST00000252444 ANP32BQ92688 251 aaKnown RBP17.27■□□□□ 0.35
LDLR-201ENST00000252444 TEFQ10587 303 aa17.26■□□□□ 0.35
LDLR-201ENST00000252444 RAPGEF4Q8WZA2 1011 aa17.26■□□□□ 0.35
LDLR-201ENST00000252444 TMEM132EQ6IEE7 984 aa17.25■□□□□ 0.35
LDLR-201ENST00000252444 CABP2Q9NPB3 220 aa17.25■□□□□ 0.35
LDLR-201ENST00000252444 PRAG1Q86YV5 1406 aa17.25■□□□□ 0.35
LDLR-201ENST00000252444 IDI1Q13907 227 aa17.25■□□□□ 0.35
LDLR-201ENST00000252444 NBPF8Q3BBV2 869 aa17.25■□□□□ 0.35
LDLR-201ENST00000252444 API5Q9BZZ5 524 aaKnown RBP17.25■□□□□ 0.35
LDLR-201ENST00000252444 CCDC9Q9Y3X0 531 aaKnown RBP17.25■□□□□ 0.35
LDLR-201ENST00000252444 SMC4Q9NTJ3 1288 aa17.25■□□□□ 0.35
LDLR-201ENST00000252444 TTC5Q8N0Z6 440 aa17.24■□□□□ 0.35
LDLR-201ENST00000252444 KIF16BQ96L93 1317 aa17.24■□□□□ 0.35
LDLR-201ENST00000252444 HSP90AB1P08238 724 aaKnown RBP17.23■□□□□ 0.35
LDLR-201ENST00000252444 PLEKHO1Q53GL0 409 aaPredicted RBP17.23■□□□□ 0.35
LDLR-201ENST00000252444 ARXQ96QS3 562 aa17.23■□□□□ 0.35
LDLR-201ENST00000252444 HSP90B1P14625 803 aaKnown RBP17.23■□□□□ 0.35
LDLR-201ENST00000252444 DDX58O95786 925 aaKnown RBP17.23■□□□□ 0.35
LDLR-201ENST00000252444 MBD5Q9P267 1494 aa17.23■□□□□ 0.35
LDLR-201ENST00000252444 PZPP20742 1482 aa17.23■□□□□ 0.35
LDLR-201ENST00000252444 TTC37Q6PGP7 1564 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms