RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 AMOTL1Q8IY63 956 aa15.79■□□□□ 0.12
USP40-201ENST00000251722 LTV1Q96GA3 475 aaPredicted RBP15.79■□□□□ 0.12
USP40-201ENST00000251722 TPM4P67936 248 aa15.79■□□□□ 0.12
USP40-201ENST00000251722 RUSC2Q8N2Y8 1516 aa15.79■□□□□ 0.12
USP40-201ENST00000251722 NOL10Q9BSC4 688 aaKnown RBP15.79■□□□□ 0.12
USP40-201ENST00000251722 KIAA2012Q0VF49 1180 aa15.78■□□□□ 0.12
USP40-201ENST00000251722 MINK1Q8N4C8 1332 aaPredicted RBP15.78■□□□□ 0.12
USP40-201ENST00000251722 FRAT2O75474 233 aaPredicted RBP15.77■□□□□ 0.12
USP40-201ENST00000251722 AAMPQ13685 434 aa15.77■□□□□ 0.12
USP40-201ENST00000251722 SLC52A1Q9NWF4 448 aa15.77■□□□□ 0.12
USP40-201ENST00000251722 RPGRIP1LQ68CZ1 1315 aa15.77■□□□□ 0.11
USP40-201ENST00000251722 SNAPC4Q5SXM2 1469 aa15.77■□□□□ 0.11
USP40-201ENST00000251722 TROQ12816 1431 aaPredicted RBP15.77■□□□□ 0.11
USP40-201ENST00000251722 API5Q9BZZ5 524 aaKnown RBP15.76■□□□□ 0.11
USP40-201ENST00000251722 TULP1O00294 542 aaPredicted RBP15.76■□□□□ 0.11
USP40-201ENST00000251722 RAPGEF4Q8WZA2 1011 aa15.75■□□□□ 0.11
USP40-201ENST00000251722 KIAA0586Q9BVV6 1533 aa15.75■□□□□ 0.11
USP40-201ENST00000251722 TPM2P07951 284 aa15.75■□□□□ 0.11
USP40-201ENST00000251722 SLC4A10Q6U841 1118 aa15.75■□□□□ 0.11
USP40-201ENST00000251722 POLA1P09884 1462 aaPredicted RBP15.74■□□□□ 0.11
USP40-201ENST00000251722 FAM43AQ8N2R8 423 aa15.74■□□□□ 0.11
USP40-201ENST00000251722 TAF3Q5VWG9 929 aa15.73■□□□□ 0.11
USP40-201ENST00000251722 GOLGA6L1Q8N7Z2 621 aa15.73■□□□□ 0.11
USP40-201ENST00000251722 ZKSCAN2Q63HK3 967 aa15.73■□□□□ 0.11
USP40-201ENST00000251722 TRIM6-TRIM34B2RNG4 842 aa15.72■□□□□ 0.11
USP40-201ENST00000251722 HSP90AB4PQ58FF6 505 aa15.72■□□□□ 0.11
USP40-201ENST00000251722 ZNF771Q7L3S4 317 aaPredicted RBP15.72■□□□□ 0.11
USP40-201ENST00000251722 CLSTN1O94985 981 aa15.72■□□□□ 0.11
USP40-201ENST00000251722 SMG6Q86US8 1419 aaKnown RBP15.72■□□□□ 0.11
USP40-201ENST00000251722 SETQ01105 290 aaPredicted RBP15.72■□□□□ 0.11
USP40-201ENST00000251722 RUFY2Q8WXA3 655 aa15.71■□□□□ 0.11
USP40-201ENST00000251722 ARID3AQ99856 593 aa15.71■□□□□ 0.11
USP40-201ENST00000251722 NUTM2FA1L443 756 aa15.71■□□□□ 0.11
USP40-201ENST00000251722 DCAF8L1A6NGE4 600 aa15.71■□□□□ 0.11
USP40-201ENST00000251722 B4GALNT3Q6L9W6 998 aa15.71■□□□□ 0.11
USP40-201ENST00000251722 APBB1O00213 710 aa15.71■□□□□ 0.1
USP40-201ENST00000251722 GNAI1P63096 354 aa15.71■□□□□ 0.1
USP40-201ENST00000251722 SENP3-EIF4A1A0A087X0R7 540 aa15.7■□□□□ 0.1
USP40-201ENST00000251722 MAGI1Q96QZ7 1491 aaPredicted RBP15.7■□□□□ 0.1
USP40-201ENST00000251722 ST18O60284 1047 aa15.7■□□□□ 0.1
USP40-201ENST00000251722 CUL7Q14999 1698 aa15.7■□□□□ 0.1
USP40-201ENST00000251722 ZMYND15Q9H091 742 aa15.7■□□□□ 0.1
USP40-201ENST00000251722 PLCB2Q00722 1185 aa15.7■□□□□ 0.1
USP40-201ENST00000251722 C9orf84Q5VXU9 1444 aa15.68■□□□□ 0.1
USP40-201ENST00000251722 ZNF692Q9BU19 519 aaPredicted RBP15.68■□□□□ 0.1
USP40-201ENST00000251722 ABCA10Q8WWZ4 1543 aa15.68■□□□□ 0.1
USP40-201ENST00000251722 RUNDC1Q96C34 613 aa15.68■□□□□ 0.1
USP40-201ENST00000251722 TRIM34Q9BYJ4 488 aa15.68■□□□□ 0.1
USP40-201ENST00000251722 TAOK2Q9UL54 1235 aa15.68■□□□□ 0.1
USP40-201ENST00000251722 TXNDC2Q86VQ3 553 aa15.68■□□□□ 0.1
USP40-201ENST00000251722 KIF16BQ96L93 1317 aa15.68■□□□□ 0.1
USP40-201ENST00000251722 CCDC66A2RUB6 948 aa15.67■□□□□ 0.1
USP40-201ENST00000251722 CPLX2Q6PUV4 134 aaKnown RBP15.67■□□□□ 0.1
USP40-201ENST00000251722 CCDC146Q8IYE0 955 aa15.67■□□□□ 0.1
USP40-201ENST00000251722 DDX19BQ9UMR2 479 aa15.67■□□□□ 0.1
USP40-201ENST00000251722 SYNE3Q6ZMZ3 975 aa15.67■□□□□ 0.1
USP40-201ENST00000251722 CNTLNQ9NXG0 1405 aa15.66■□□□□ 0.1
USP40-201ENST00000251722 ANKLE2Q86XL3 938 aa15.66■□□□□ 0.1
USP40-201ENST00000251722 NESP48681 1621 aa15.66■□□□□ 0.1
USP40-201ENST00000251722 C9orf78Q9NZ63 289 aaPredicted RBP15.66■□□□□ 0.1
USP40-201ENST00000251722 PRXQ9BXM0 1461 aa15.66■□□□□ 0.1
USP40-201ENST00000251722 GAS2L2Q8NHY3 880 aa15.66■□□□□ 0.1
USP40-201ENST00000251722 PROSER2Q86WR7 435 aaPredicted RBP15.66■□□□□ 0.1
USP40-201ENST00000251722 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.65■□□□□ 0.1
USP40-201ENST00000251722 CENPQQ7L2Z9 268 aaPredicted RBP15.65■□□□□ 0.1
USP40-201ENST00000251722 PPP6R1Q9UPN7 881 aa15.65■□□□□ 0.1
USP40-201ENST00000251722 ANKRD30BQ9BXX2 1392 aa15.65■□□□□ 0.1
USP40-201ENST00000251722 DAPK1P53355 1430 aa15.65■□□□□ 0.1
USP40-201ENST00000251722 MSH5O43196 834 aa15.65■□□□□ 0.1
USP40-201ENST00000251722 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.65■□□□□ 0.1
USP40-201ENST00000251722 ATP6V1DQ9Y5K8 247 aa15.64■□□□□ 0.09
USP40-201ENST00000251722 AKAP17AQ02040 695 aaKnown RBP15.64■□□□□ 0.09
USP40-201ENST00000251722 DRC7Q8IY82 874 aa15.64■□□□□ 0.09
USP40-201ENST00000251722 SYNJ1O43426 1573 aa15.64■□□□□ 0.09
USP40-201ENST00000251722 PHF14O94880 888 aa15.64■□□□□ 0.09
USP40-201ENST00000251722 HOMEZQ8IX15 550 aa15.63■□□□□ 0.09
USP40-201ENST00000251722 TPRNQ4KMQ1 711 aa15.63■□□□□ 0.09
USP40-201ENST00000251722 PLEKHO1Q53GL0 409 aaPredicted RBP15.63■□□□□ 0.09
USP40-201ENST00000251722 PRKRIP1Q9H875 184 aaPredicted RBP15.63■□□□□ 0.09
USP40-201ENST00000251722 SUPT6HQ7KZ85 1726 aaKnown RBP15.63■□□□□ 0.09
USP40-201ENST00000251722 IQGAP2Q13576 1575 aa15.62■□□□□ 0.09
USP40-201ENST00000251722 CTDP1Q9Y5B0 961 aaPredicted RBP15.62■□□□□ 0.09
USP40-201ENST00000251722 ZBED9Q6R2W3 1325 aa15.62■□□□□ 0.09
USP40-201ENST00000251722 MARCH6O60337 910 aa15.62■□□□□ 0.09
USP40-201ENST00000251722 TOMM22Q9NS69 142 aa15.61■□□□□ 0.09
USP40-201ENST00000251722 RASSF8Q8NHQ8 419 aa15.61■□□□□ 0.09
USP40-201ENST00000251722 PNISRQ8TF01 805 aaKnown RBP15.61■□□□□ 0.09
USP40-201ENST00000251722 KIAA1107Q9UPP5 1409 aa15.61■□□□□ 0.09
USP40-201ENST00000251722 RIPK4P57078 832 aa15.6■□□□□ 0.09
USP40-201ENST00000251722 IL27Q8NEV9 243 aa15.6■□□□□ 0.09
USP40-201ENST00000251722 AFAP1Q8N556 730 aa15.6■□□□□ 0.09
USP40-201ENST00000251722 G3BP1Q13283 466 aaKnown RBP eCLIP15.6■□□□□ 0.09
USP40-201ENST00000251722 DIAPH3Q9NSV4 1193 aa15.59■□□□□ 0.09
USP40-201ENST00000251722 VPS37DQ86XT2 251 aa15.59■□□□□ 0.09
USP40-201ENST00000251722 REC8O95072 547 aa15.59■□□□□ 0.09
USP40-201ENST00000251722 NLRP6P59044 892 aa15.59■□□□□ 0.09
USP40-201ENST00000251722 NOM1Q5C9Z4 860 aaKnown RBP15.59■□□□□ 0.09
USP40-201ENST00000251722 RNF20Q5VTR2 975 aa15.59■□□□□ 0.09
USP40-201ENST00000251722 FAM13BQ9NYF5 915 aa15.59■□□□□ 0.09
USP40-201ENST00000251722 NLRP2Q9NX02 1062 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms