RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 PIK3C2BO00750 1634 aa28.22■■■□□ 2.11
SNX3-201ENST00000230085 WASHC2AQ641Q2 1341 aa28.22■■■□□ 2.11
SNX3-201ENST00000230085 LMTK3Q96Q04 1460 aa28.21■■■□□ 2.11
SNX3-201ENST00000230085 CEP170BQ9Y4F5 1589 aaPredicted RBP28.21■■■□□ 2.11
SNX3-201ENST00000230085 A2ML1A8K2U0 1454 aa28.21■■■□□ 2.11
SNX3-201ENST00000230085 CLTCL1P53675 1640 aa28.2■■■□□ 2.11
SNX3-201ENST00000230085 STAG3Q9UJ98 1225 aa28.19■■■□□ 2.1
SNX3-201ENST00000230085 CCDC144AA2RUR9 1427 aa28.18■■■□□ 2.1
SNX3-201ENST00000230085 CHGAP10645 457 aaKnown RBP28.18■■■□□ 2.1
SNX3-201ENST00000230085 ZNF142P52746 1687 aaPredicted RBP28.18■■■□□ 2.1
SNX3-201ENST00000230085 HSPA2P54652 639 aa28.16■■■□□ 2.1
SNX3-201ENST00000230085 HSPA5P11021 654 aaKnown RBP28.14■■■□□ 2.1
SNX3-201ENST00000230085 EIF4G2P78344 907 aaKnown RBP eCLIP28.14■■■□□ 2.1
SNX3-201ENST00000230085 HNRNPUQ00839 825 aaKnown RBP eCLIP28.14■■■□□ 2.1
SNX3-201ENST00000230085 UBR1Q8IWV7 1749 aa28.14■■■□□ 2.1
SNX3-201ENST00000230085 THEMISQ8N1K5 641 aaPredicted RBP28.12■■■□□ 2.09
SNX3-201ENST00000230085 MYO5BQ9ULV0 1848 aa28.11■■■□□ 2.09
SNX3-201ENST00000230085 TMEM131LA2VDJ0 1609 aa28.11■■■□□ 2.09
SNX3-201ENST00000230085 ADGRB3O60242 1522 aa28.11■■■□□ 2.09
SNX3-201ENST00000230085 CCDC7Q96M83 1385 aa28.09■■■□□ 2.09
SNX3-201ENST00000230085 PPP4R2Q9NY27 417 aa28.09■■■□□ 2.09
SNX3-201ENST00000230085 KIF1BO60333 1816 aa28.09■■■□□ 2.09
SNX3-201ENST00000230085 KDM5AP29375 1690 aaKnown RBP28.08■■■□□ 2.09
SNX3-201ENST00000230085 ZBED9Q6R2W3 1325 aa28.08■■■□□ 2.09
SNX3-201ENST00000230085 SPATA31E1Q6ZUB1 1445 aa28.07■■■□□ 2.08
SNX3-201ENST00000230085 BCL11AQ9H165 835 aa28.07■■■□□ 2.08
SNX3-201ENST00000230085 MSH5O43196 834 aa28.06■■■□□ 2.08
SNX3-201ENST00000230085 RGL3Q3MIN7 710 aa28.05■■■□□ 2.08
SNX3-201ENST00000230085 ZNF326Q5BKZ1 582 aaKnown RBP28.04■■■□□ 2.08
SNX3-201ENST00000230085 TMEM2Q9UHN6 1383 aa28.02■■■□□ 2.08
SNX3-201ENST00000230085 PRKRIP1Q9H875 184 aaPredicted RBP28.02■■■□□ 2.08
SNX3-201ENST00000230085 NUTM2DQ5VT03 806 aaPredicted RBP27.99■■■□□ 2.07
SNX3-201ENST00000230085 SLIT1O75093 1534 aa27.99■■■□□ 2.07
SNX3-201ENST00000230085 LTKP29376 864 aa27.99■■■□□ 2.07
SNX3-201ENST00000230085 ARHGAP23Q9P227 1491 aa27.98■■■□□ 2.07
SNX3-201ENST00000230085 NCKAP5LQ9HCH0 1330 aa27.97■■■□□ 2.07
SNX3-201ENST00000230085 TXNDC2Q86VQ3 553 aa27.97■■■□□ 2.07
SNX3-201ENST00000230085 ANKLE2Q86XL3 938 aa27.97■■■□□ 2.07
SNX3-201ENST00000230085 RIMS2Q9UQ26 1411 aa27.96■■■□□ 2.07
SNX3-201ENST00000230085 ZFYVE9O95405 1425 aa27.95■■■□□ 2.07
SNX3-201ENST00000230085 EID1Q9Y6B2 187 aa27.95■■■□□ 2.06
SNX3-201ENST00000230085 L3MBTL2Q969R5 705 aa27.94■■■□□ 2.06
SNX3-201ENST00000230085 NEURL4Q96JN8 1562 aa27.93■■■□□ 2.06
SNX3-201ENST00000230085 STRCQ7RTU9 1775 aa27.93■■■□□ 2.06
SNX3-201ENST00000230085 NEXMIFQ5QGS0 1516 aa27.91■■■□□ 2.06
SNX3-201ENST00000230085 HDGFP51858 240 aaKnown RBP27.91■■■□□ 2.06
SNX3-201ENST00000230085 SENP3Q9H4L4 574 aaPredicted RBP27.91■■■□□ 2.06
SNX3-201ENST00000230085 RPGRIP1LQ68CZ1 1315 aa27.91■■■□□ 2.06
SNX3-201ENST00000230085 SCAF11Q99590 1463 aaKnown RBP27.9■■■□□ 2.06
SNX3-201ENST00000230085 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.89■■■□□ 2.06
SNX3-201ENST00000230085 SMG6Q86US8 1419 aaKnown RBP27.89■■■□□ 2.05
SNX3-201ENST00000230085 DCAF11Q8TEB1 546 aa27.87■■■□□ 2.05
SNX3-201ENST00000230085 PPLO60437 1756 aa27.87■■■□□ 2.05
SNX3-201ENST00000230085 RNF123Q5XPI4 1314 aa27.86■■■□□ 2.05
SNX3-201ENST00000230085 VGFO15240 615 aaPredicted RBP27.85■■■□□ 2.05
SNX3-201ENST00000230085 KDM2AQ9Y2K7 1162 aa27.85■■■□□ 2.05
SNX3-201ENST00000230085 C11orf95C9JLR9 678 aaPredicted RBP27.84■■■□□ 2.05
SNX3-201ENST00000230085 IFT172Q9UG01 1749 aa27.84■■■□□ 2.05
SNX3-201ENST00000230085 ADGRF5Q8IZF2 1346 aa27.83■■■□□ 2.05
SNX3-201ENST00000230085 MED14O60244 1454 aa27.82■■■□□ 2.04
SNX3-201ENST00000230085 CCDC184Q52MB2 194 aa27.82■■■□□ 2.04
SNX3-201ENST00000230085 NPHP4O75161 1426 aaPredicted RBP27.82■■■□□ 2.04
SNX3-201ENST00000230085 KIF7Q2M1P5 1343 aa27.81■■■□□ 2.04
SNX3-201ENST00000230085 PLEKHG1Q9ULL1 1385 aa27.8■■■□□ 2.04
SNX3-201ENST00000230085 MRS2Q9HD23 443 aa27.79■■■□□ 2.04
SNX3-201ENST00000230085 NBPF8Q3BBV2 869 aa27.78■■■□□ 2.04
SNX3-201ENST00000230085 IQGAP1P46940 1657 aa27.78■■■□□ 2.04
SNX3-201ENST00000230085 SLC26A8Q96RN1 970 aa27.77■■■□□ 2.04
SNX3-201ENST00000230085 DMRT2Q9Y5R5 561 aa27.76■■■□□ 2.03
SNX3-201ENST00000230085 MYOM2P54296 1465 aa27.74■■■□□ 2.03
SNX3-201ENST00000230085 STAC3Q96MF2 364 aa27.73■■■□□ 2.03
SNX3-201ENST00000230085 IRX6P78412 446 aaPredicted RBP27.73■■■□□ 2.03
SNX3-201ENST00000230085 ERICH6Q7L0X2 663 aa27.73■■■□□ 2.03
SNX3-201ENST00000230085 ADAMTS13Q76LX8 1427 aa27.71■■■□□ 2.03
SNX3-201ENST00000230085 NRXN3Q9Y4C0 1643 aa27.71■■■□□ 2.03
SNX3-201ENST00000230085 ROCK2O75116 1388 aaKnown RBP27.71■■■□□ 2.03
SNX3-201ENST00000230085 NRXN1Q9ULB1 1477 aa27.71■■■□□ 2.03
SNX3-201ENST00000230085 PIK3C2GO75747 1445 aa27.7■■■□□ 2.02
SNX3-201ENST00000230085 SETBP1Q9Y6X0 1596 aa27.7■■■□□ 2.02
SNX3-201ENST00000230085 TBX22Q9Y458 520 aa27.67■■■□□ 2.02
SNX3-201ENST00000230085 KTN1Q86UP2 1357 aaKnown RBP27.67■■■□□ 2.02
SNX3-201ENST00000230085 CFAP70Q5T0N1 1121 aa27.65■■■□□ 2.02
SNX3-201ENST00000230085 FAM9BQ8IZU0 186 aa27.65■■■□□ 2.02
SNX3-201ENST00000230085 ALKQ9UM73 1620 aa27.65■■■□□ 2.02
SNX3-201ENST00000230085 NUDCQ9Y266 331 aa27.65■■■□□ 2.02
SNX3-201ENST00000230085 RALGAPBQ86X10 1494 aa27.64■■■□□ 2.02
SNX3-201ENST00000230085 PRAG1Q86YV5 1406 aa27.64■■■□□ 2.01
SNX3-201ENST00000230085 C14orf93Q9H972 538 aaKnown RBP27.63■■■□□ 2.01
SNX3-201ENST00000230085 METP08581 1390 aa27.62■■■□□ 2.01
SNX3-201ENST00000230085 SETD1AO15047 1707 aaKnown RBP27.6■■■□□ 2.01
SNX3-201ENST00000230085 DIP2AQ14689 1571 aa27.6■■■□□ 2.01
SNX3-201ENST00000230085 ZNF335Q9H4Z2 1342 aaPredicted RBP27.59■■■□□ 2.01
SNX3-201ENST00000230085 TMEM132EQ6IEE7 984 aa27.59■■■□□ 2.01
SNX3-201ENST00000230085 B4GALNT3Q6L9W6 998 aa27.59■■■□□ 2.01
SNX3-201ENST00000230085 USP47Q96K76 1375 aa27.59■■■□□ 2.01
SNX3-201ENST00000230085 LRPPRCP42704 1394 aaKnown RBP27.56■■■□□ 2
SNX3-201ENST00000230085 NBPF1Q3BBV0 1214 aa27.55■■■□□ 2
SNX3-201ENST00000230085 PTPRUQ92729 1446 aa27.54■■■□□ 2
SNX3-201ENST00000230085 LAMC1P11047 1609 aa27.53■■■□□ 2
SNX3-201ENST00000230085 PIK3R4Q99570 1358 aa27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms