RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 SLC52A1Q9NWF4 448 aa27.52■■■□□ 2
TNFRSF1A-201ENST00000162749 IDI1Q13907 227 aa27.52■■■□□ 2
TNFRSF1A-201ENST00000162749 NRXN1Q9ULB1 1477 aa27.52■■■□□ 2
TNFRSF1A-201ENST00000162749 ARID4BQ4LE39 1312 aaPredicted RBP27.51■■□□□ 1.99
TNFRSF1A-201ENST00000162749 SPATA31D1Q6ZQQ2 1576 aa27.5■■□□□ 1.99
TNFRSF1A-201ENST00000162749 ST20-MTHFSA0A0A6YYL1 179 aa27.5■■□□□ 1.99
TNFRSF1A-201ENST00000162749 KIF7Q2M1P5 1343 aa27.5■■□□□ 1.99
TNFRSF1A-201ENST00000162749 TMEM131LA2VDJ0 1609 aa27.49■■□□□ 1.99
TNFRSF1A-201ENST00000162749 ADGRF5Q8IZF2 1346 aa27.49■■□□□ 1.99
TNFRSF1A-201ENST00000162749 IQGAP1P46940 1657 aa27.49■■□□□ 1.99
TNFRSF1A-201ENST00000162749 NEXMIFQ5QGS0 1516 aa27.46■■□□□ 1.99
TNFRSF1A-201ENST00000162749 YTHDC1Q96MU7 727 aaKnown RBP27.46■■□□□ 1.99
TNFRSF1A-201ENST00000162749 RPGRIP1LQ68CZ1 1315 aa27.45■■□□□ 1.99
TNFRSF1A-201ENST00000162749 ESF1Q9H501 851 aaKnown RBP27.44■■□□□ 1.98
TNFRSF1A-201ENST00000162749 ZMYM3Q14202 1370 aa27.44■■□□□ 1.98
TNFRSF1A-201ENST00000162749 PIK3C2GO75747 1445 aa27.42■■□□□ 1.98
TNFRSF1A-201ENST00000162749 PELP1Q8IZL8 1130 aaKnown RBP27.42■■□□□ 1.98
TNFRSF1A-201ENST00000162749 CFAP70Q5T0N1 1121 aa27.39■■□□□ 1.98
TNFRSF1A-201ENST00000162749 SCAF11Q99590 1463 aaKnown RBP27.38■■□□□ 1.97
TNFRSF1A-201ENST00000162749 FER1L4A9Z1Z3 1794 aa27.36■■□□□ 1.97
TNFRSF1A-201ENST00000162749 SETBP1Q9Y6X0 1596 aa27.36■■□□□ 1.97
TNFRSF1A-201ENST00000162749 TESK2Q96S53 571 aa27.35■■□□□ 1.97
TNFRSF1A-201ENST00000162749 GTF3C3Q9Y5Q9 886 aa27.33■■□□□ 1.97
TNFRSF1A-201ENST00000162749 VGFO15240 615 aaPredicted RBP27.33■■□□□ 1.97
TNFRSF1A-201ENST00000162749 ZFYVE9O95405 1425 aa27.33■■□□□ 1.97
TNFRSF1A-201ENST00000162749 ANP32CO43423 234 aa27.32■■□□□ 1.96
TNFRSF1A-201ENST00000162749 NUTM2DQ5VT03 806 aaPredicted RBP27.32■■□□□ 1.96
TNFRSF1A-201ENST00000162749 ADGRB1O14514 1584 aa27.3■■□□□ 1.96
TNFRSF1A-201ENST00000162749 C14orf93Q9H972 538 aaKnown RBP27.3■■□□□ 1.96
TNFRSF1A-201ENST00000162749 A2ML1A8K2U0 1454 aa27.3■■□□□ 1.96
TNFRSF1A-201ENST00000162749 POLR3GLQ9BT43 218 aa27.29■■□□□ 1.96
TNFRSF1A-201ENST00000162749 C3P01024 1663 aa27.29■■□□□ 1.96
TNFRSF1A-201ENST00000162749 STAG3Q9UJ98 1225 aa27.28■■□□□ 1.96
TNFRSF1A-201ENST00000162749 EIF3AQ14152 1382 aaKnown RBP27.27■■□□□ 1.96
TNFRSF1A-201ENST00000162749 DISP3Q9P2K9 1392 aa27.26■■□□□ 1.96
TNFRSF1A-201ENST00000162749 TNRQ92752 1358 aa27.25■■□□□ 1.95
TNFRSF1A-201ENST00000162749 KDM5AP29375 1690 aaKnown RBP27.24■■□□□ 1.95
TNFRSF1A-201ENST00000162749 MYO3AQ8NEV4 1616 aa27.24■■□□□ 1.95
TNFRSF1A-201ENST00000162749 UBR1Q8IWV7 1749 aa27.21■■□□□ 1.95
TNFRSF1A-201ENST00000162749 TMF1P82094 1093 aa27.21■■□□□ 1.95
TNFRSF1A-201ENST00000162749 CEBPAP49715 358 aaPredicted RBP27.18■■□□□ 1.94
TNFRSF1A-201ENST00000162749 TMEM132EQ6IEE7 984 aa27.18■■□□□ 1.94
TNFRSF1A-201ENST00000162749 RIMS2Q9UQ26 1411 aa27.17■■□□□ 1.94
TNFRSF1A-201ENST00000162749 CCER2I3L3R5 266 aa27.17■■□□□ 1.94
TNFRSF1A-201ENST00000162749 ASXL1Q8IXJ9 1541 aa27.16■■□□□ 1.94
TNFRSF1A-201ENST00000162749 ARHGEF28Q8N1W1 1705 aaKnown RBP27.16■■□□□ 1.94
TNFRSF1A-201ENST00000162749 NLRP1Q9C000 1473 aa27.14■■□□□ 1.94
TNFRSF1A-201ENST00000162749 QRICH2Q9H0J4 1663 aa27.14■■□□□ 1.93
TNFRSF1A-201ENST00000162749 ALKQ9UM73 1620 aa27.13■■□□□ 1.93
TNFRSF1A-201ENST00000162749 TRAK1Q9UPV9 953 aa27.13■■□□□ 1.93
TNFRSF1A-201ENST00000162749 PRKRIP1Q9H875 184 aaPredicted RBP27.12■■□□□ 1.93
TNFRSF1A-201ENST00000162749 SBNO2Q9Y2G9 1366 aa27.12■■□□□ 1.93
TNFRSF1A-201ENST00000162749 SENP3Q9H4L4 574 aaPredicted RBP27.12■■□□□ 1.93
TNFRSF1A-201ENST00000162749 RIMS1Q86UR5 1692 aaKnown RBP27.11■■□□□ 1.93
TNFRSF1A-201ENST00000162749 SETD1AO15047 1707 aaKnown RBP27.11■■□□□ 1.93
TNFRSF1A-201ENST00000162749 CENPJQ9HC77 1338 aaPredicted RBP27.09■■□□□ 1.93
TNFRSF1A-201ENST00000162749 NRXN3Q9Y4C0 1643 aa27.08■■□□□ 1.93
TNFRSF1A-201ENST00000162749 ADAMTSL3P82987 1691 aa27.08■■□□□ 1.93
TNFRSF1A-201ENST00000162749 MYOM1P52179 1685 aa27.07■■□□□ 1.92
TNFRSF1A-201ENST00000162749 SLC24A1O60721 1099 aa27.07■■□□□ 1.92
TNFRSF1A-201ENST00000162749 CDCA8Q53HL2 280 aa27.06■■□□□ 1.92
TNFRSF1A-201ENST00000162749 TMEM2Q9UHN6 1383 aa27.06■■□□□ 1.92
TNFRSF1A-201ENST00000162749 PLPPR3Q6T4P5 718 aa27.05■■□□□ 1.92
TNFRSF1A-201ENST00000162749 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.05■■□□□ 1.92
TNFRSF1A-201ENST00000162749 PTPRMP28827 1452 aa27.04■■□□□ 1.92
TNFRSF1A-201ENST00000162749 YTHDC2Q9H6S0 1430 aaKnown RBP27.02■■□□□ 1.92
TNFRSF1A-201ENST00000162749 HDGFP51858 240 aaKnown RBP27■■□□□ 1.91
TNFRSF1A-201ENST00000162749 PER1O15534 1290 aaPredicted RBP26.99■■□□□ 1.91
TNFRSF1A-201ENST00000162749 PANK3Q9H999 370 aa26.97■■□□□ 1.91
TNFRSF1A-201ENST00000162749 STK26Q9P289 416 aa26.97■■□□□ 1.91
TNFRSF1A-201ENST00000162749 SLIT1O75093 1534 aa26.96■■□□□ 1.91
TNFRSF1A-201ENST00000162749 SETD1BQ9UPS6 1966 aaKnown RBP26.94■■□□□ 1.9
TNFRSF1A-201ENST00000162749 CNGB1Q14028 1251 aaPredicted RBP26.94■■□□□ 1.9
TNFRSF1A-201ENST00000162749 ARHGAP23Q9P227 1491 aa26.94■■□□□ 1.9
TNFRSF1A-201ENST00000162749 TULP4Q9NRJ4 1543 aa26.93■■□□□ 1.9
TNFRSF1A-201ENST00000162749 CEP170BQ9Y4F5 1589 aaPredicted RBP26.92■■□□□ 1.9
TNFRSF1A-201ENST00000162749 CCDC184Q52MB2 194 aa26.92■■□□□ 1.9
TNFRSF1A-201ENST00000162749 LTKP29376 864 aa26.92■■□□□ 1.9
TNFRSF1A-201ENST00000162749 DLC1Q96QB1 1528 aa26.91■■□□□ 1.9
TNFRSF1A-201ENST00000162749 METP08581 1390 aa26.9■■□□□ 1.9
TNFRSF1A-201ENST00000162749 KTN1Q86UP2 1357 aaKnown RBP26.9■■□□□ 1.9
TNFRSF1A-201ENST00000162749 LRPPRCP42704 1394 aaKnown RBP26.89■■□□□ 1.9
TNFRSF1A-201ENST00000162749 PLEKHG1Q9ULL1 1385 aa26.89■■□□□ 1.89
TNFRSF1A-201ENST00000162749 SAFB2Q14151 953 aaKnown RBP eCLIP26.88■■□□□ 1.89
TNFRSF1A-201ENST00000162749 PRAM1Q96QH2 718 aa26.88■■□□□ 1.89
TNFRSF1A-201ENST00000162749 KNDC1Q76NI1 1749 aa26.88■■□□□ 1.89
TNFRSF1A-201ENST00000162749 ZNF142P52746 1687 aaPredicted RBP26.88■■□□□ 1.89
TNFRSF1A-201ENST00000162749 ADAMTS13Q76LX8 1427 aa26.88■■□□□ 1.89
TNFRSF1A-201ENST00000162749 TXNDC2Q86VQ3 553 aa26.87■■□□□ 1.89
TNFRSF1A-201ENST00000162749 THEMISQ8N1K5 641 aaPredicted RBP26.87■■□□□ 1.89
TNFRSF1A-201ENST00000162749 ABCC11Q96J66 1382 aa26.86■■□□□ 1.89
TNFRSF1A-201ENST00000162749 PARD3Q8TEW0 1356 aa26.85■■□□□ 1.89
TNFRSF1A-201ENST00000162749 EVC2Q86UK5 1308 aa26.85■■□□□ 1.89
TNFRSF1A-201ENST00000162749 RALBP1Q15311 655 aa26.85■■□□□ 1.89
TNFRSF1A-201ENST00000162749 MRS2Q9HD23 443 aa26.85■■□□□ 1.89
TNFRSF1A-201ENST00000162749 EID1Q9Y6B2 187 aa26.85■■□□□ 1.89
TNFRSF1A-201ENST00000162749 BCANQ96GW7 911 aa26.84■■□□□ 1.89
TNFRSF1A-201ENST00000162749 POGKQ9P215 609 aa26.84■■□□□ 1.89
TNFRSF1A-201ENST00000162749 MED14O60244 1454 aa26.81■■□□□ 1.88
TNFRSF1A-201ENST00000162749 PUS7Q96PZ0 661 aaKnown RBP26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms