RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZKSCAN4Q969J2 545 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GTPBP3Q969Y2 492 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 MFFQ9GZY8 342 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AZI2Q9H6S1 392 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DNAJC17Q9NVM6 304 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 INVSQ9Y283 1065 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PDE9AO76083 593 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 HOXD10P28358 340 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 NR2C2P49116 596 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 UBE3AQ05086 875 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GRIK3Q13003 919 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 MORC3Q14149 939 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 UAP1Q16222 522 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 EMC10Q5UCC4 262 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GALNT18Q6P9A2 607 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 MYO7BQ6PIF6 2116 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 FOXR1Q6PIV2 292 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SLC9B2Q86UD5 537 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TTC16Q8NEE8 873 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CA5BP1Q8WTZ4 195 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CITED4Q96RK1 184 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 USP28Q96RU2 1077 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CDC6Q99741 560 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GCOM2Q9BZD3 368 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AP5M1Q9H0R1 490 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 MPP6Q9NZW5 540 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DLGAP2Q9P1A6 1054 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 EPN1Q9Y6I3 576 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 JUNDP17535 347 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SKP1P63208 163 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CABLES1Q8TDN4 633 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 LPIN3Q9BQK8 851 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NGRNQ9NPE2 291 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 IGSF5Q9NSI5 407 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 BTBD7Q9P203 1132 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 OR6C65A6NJZ3 312 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SRRM3A6NNA2 597 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ABLIM1O14639 778 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 LARGE1O95461 756 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ASS1P00966 412 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 GCH1P30793 250 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 USP11P51784 963 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SHROOM1Q2M3G4 852 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KMT5BQ4FZB7 885 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TMC8Q8IU68 726 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SLC43A2Q8N370 569 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC106Q9BWC9 280 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SCPEP1Q9HB40 452 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 IL1RAPL1Q9NZN1 696 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SERTM1A2A2V5 107 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 STX16-NPEPL1H3BU86 382 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ASAP2O43150 1006 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TKTL1P51854 596 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ERCC6LQ2NKX8 1250 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CIAPIN1Q6FI81 312 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 AAGABQ6PD74 315 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 EXOC3L1Q86VI1 746 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MICALL2Q8IY33 904 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 HUS1BQ8NHY5 278 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CHCHD6Q9BRQ6 235 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SP140LQ9H930 580 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ORC3Q9UBD5 711 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DGKBQ9Y6T7 804 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 HTR3EA5X5Y0 456 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KPNA5O15131 536 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SGSM2O43147 1006 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PRKCAP17252 672 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KCNA3P22001 575 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 RFC5P40937 340 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 EPHB4P54760 987 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 OCA2Q04671 838 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MESDQ14696 234 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 OCLNQ16625 522 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC142Q17RM4 750 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 HEATR6Q6AI08 1181 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TMEM132EQ6IEE7 984 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TMEM214Q6NUQ4 689 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF551Q7Z340 670 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TMC3Q7Z5M5 1100 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 HACE1Q8IYU2 909 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DDHD1Q8NEL9 900 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DQX1Q8TE96 717 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ZSWIM6Q9HCJ5 1215 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 LZTFL1Q9NQ48 299 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PTTG3PQ9NZH4 202 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1W2PRG6 482 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TLR3O15455 904 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TNFRSF21O75509 655 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CD4P01730 458 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DLATP10515 647 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KCNA6P17658 529 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CD9P21926 228 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TSPAN7P41732 249 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NLRP11P59045 1033 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ARF3P61204 181 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ARF1P84077 181 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KBTBD2Q8IY47 623 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SYT2Q8N9I0 419 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC197Q8NCU1 140 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SYN2Q92777 582 aaPredicted RBP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms