RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MARS2Q96GW9 593 aaKnown RBP0.93□□□□□ -2.26
VPS35-212ENST00000640313 PAWRQ96IZ0 340 aaKnown RBP0.93□□□□□ -2.26
VPS35-212ENST00000640313 ZC3H10Q96K80 434 aaKnown RBP0.93□□□□□ -2.26
VPS35-212ENST00000640313 CAMKK2Q96RR4 588 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 BUD13Q9BRD0 619 aaKnown RBP eCLIP0.93□□□□□ -2.267e-6■■□□□ 11.5
VPS35-212ENST00000640313 MRI1Q9BV20 369 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 GSTO2Q9H4Y5 243 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 SERTAD4Q9NUC0 356 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 TRNAU1APQ9NX07 287 aaKnown RBP0.93□□□□□ -2.26
VPS35-212ENST00000640313 HSFX1Q9UBD0 423 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 NDOR1Q9UHB4 597 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 SIK3Q9Y2K2 1263 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 NUMBLQ9Y6R0 609 aa0.93□□□□□ -2.26
VPS35-212ENST00000640313 RPTORQ8N122 1335 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 ST20-MTHFSA0A0A6YYL1 179 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 PRAMEF33A0A0G2JMD5 474 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 VWC2LB2RUY7 222 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 PRAMEF10O60809 474 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 PHF2O75151 1096 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 URI1O94763 535 aaPredicted RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 EYA4O95677 639 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 CGAP01215 116 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 IGKV3-20P01619 116 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 CHRM2P08172 466 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 FAM153BP0C7A2 387 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 PRF1P14222 555 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 SLC6A2P23975 617 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 CD40P25942 277 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 PTPN7P35236 360 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 ARHGAP25P42331 645 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 RAP2BP61225 183 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 RPS7P62081 194 aaKnown RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 FPGSQ05932 587 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 ITIH3Q06033 890 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 SF3B4Q15427 424 aaKnown RBP eCLIP0.92□□□□□ -2.26
VPS35-212ENST00000640313 Q4G0T1 1027 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 PITRM1Q5JRX3 1037 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 ZBTB41Q5SVQ8 909 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 LCE1FQ5T754 118 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 CREB3L3Q68CJ9 461 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 OTUD7BQ6GQQ9 843 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 ZCCHC8Q6NZY4 707 aaKnown RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 LVRNQ6Q4G3 990 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 FGD2Q7Z6J4 655 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 CUZD1Q86UP6 607 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 LYSMD2Q8IV50 215 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 TRMT2AQ8IZ69 625 aaKnown RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 SPEM1Q8N4L4 309 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 C8orf58Q8NAV2 365 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 TOR1AIP2Q8NFQ8 470 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 MYCBPAPQ8TBZ2 947 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 TBC1D5Q92609 795 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 DDX17Q92841 729 aaKnown RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 RFKQ969G6 155 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 ZNF496Q96IT1 587 aaPredicted RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 PBKQ96KB5 322 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 FAM84BQ96KN1 310 aaPredicted RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 MRPL4Q9BYD3 311 aaKnown RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 WNT8AQ9H1J5 351 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 CCSER2Q9H7U1 834 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 ZMAT4Q9H898 229 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 CABP5Q9NP86 173 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 GJB4Q9NTQ9 266 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 TRMT13Q9NUP7 481 aaKnown RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 SAMD15Q9P1V8 674 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 B4GALT6Q9UBX8 382 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 EVLQ9UI08 416 aaPredicted RBP0.92□□□□□ -2.26
VPS35-212ENST00000640313 PRSS50Q9UI38 385 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 TMPRSS11EQ9UL52 423 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 MSRB2Q9Y3D2 182 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 NEU2Q9Y3R4 380 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 MMP24Q9Y5R2 645 aa0.92□□□□□ -2.26
VPS35-212ENST00000640313 WDR17Q8IZU2 1322 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 ADGRA2Q96PE1 1338 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CCDC163A0A0D9SF12 145 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 PRSS38A1L453 326 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 FAM83GA6ND36 823 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 IFITM10A6NMD0 228 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 GSG1L2A8MUP6 293 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 WNT10BO00744 389 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 ZNF213O14771 459 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 TNFRSF13BO14836 293 aaPredicted RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 PDPK1O15530 556 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 ADCY6O43306 1168 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 SLC28A2O43868 658 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 GLRX3O76003 335 aaKnown RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 TOMM40O96008 361 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CRYABP02511 175 aaKnown RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 FAM163BP0C2L3 166 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 IL2RBP14784 551 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 KCNA2P16389 499 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 ATP5JP18859 108 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CDKN2AP42771 156 aaKnown RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 RANGAP1P46060 587 aaPredicted RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 KCNJ5P48544 419 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 SCNN1BP51168 640 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 HNRNPMP52272 730 aaKnown RBP eCLIP0.91□□□□□ -2.26
VPS35-212ENST00000640313 NOMO3P69849 1222 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 PPARAQ07869 468 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 SRSF1Q07955 248 aaKnown RBP eCLIP0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms