RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SYN3O14994 580 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 ABLIM3O94929 683 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 PSMC3P17980 439 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 CCNE1P24864 410 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 CCR3P51677 355 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 NRLP54845 237 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 SATB1Q01826 763 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 DMP1Q13316 513 aaPredicted RBP16.43■□□□□ 0.22
SYNE2-228ENST00000639659 TEAD2Q15562 447 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 TTC38Q5R3I4 469 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 HEATR6Q6AI08 1181 aaKnown RBP16.43■□□□□ 0.22
SYNE2-228ENST00000639659 GPIHBP1Q8IV16 184 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 YAF2Q8IY57 180 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 TCEAL8Q8IYN2 117 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 ZSCAN18Q8TBC5 510 aaPredicted RBP16.43■□□□□ 0.22
SYNE2-228ENST00000639659 CSGALNACT1Q8TDX6 532 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 SNX29Q8TEQ0 813 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 NELL1Q92832 810 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 SMARCD2Q92925 531 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 ACAP3Q96P50 834 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 ACO2Q99798 780 aaKnown RBP16.43■□□□□ 0.22
SYNE2-228ENST00000639659 RTKNQ9BST9 563 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 FAM126AQ9BYI3 521 aaPredicted RBP16.43■□□□□ 0.22
SYNE2-228ENST00000639659 ASAH2Q9NR71 780 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 ANKFY1Q9P2R3 1169 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 CITO14578 2027 aa16.43■□□□□ 0.22
SYNE2-228ENST00000639659 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.42■□□□□ 0.22
SYNE2-228ENST00000639659 MARCKSP29966 332 aaPredicted RBP16.42■□□□□ 0.22
SYNE2-228ENST00000639659 MATR3P43243 847 aaKnown RBP eCLIP16.42■□□□□ 0.22
SYNE2-228ENST00000639659 NPTX2P47972 431 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 KPNA1P52294 538 aaPredicted RBP16.42■□□□□ 0.22
SYNE2-228ENST00000639659 SRSF5Q13243 272 aaKnown RBP16.42■□□□□ 0.22
SYNE2-228ENST00000639659 NBR1Q14596 966 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 SEZ6Q53EL9 994 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 LAIR1Q6GTX8 287 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.42■□□□□ 0.22
SYNE2-228ENST00000639659 TMEM130Q8N3G9 435 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 TTC8Q8TAM2 541 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 C8orf76Q96K31 380 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 KMT5AQ9NQR1 393 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 RBM12Q9NTZ6 932 aaKnown RBP16.42■□□□□ 0.22
SYNE2-228ENST00000639659 CEP72Q9P209 647 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 LRWD1Q9UFC0 647 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 COL4A2P08572 1712 aa16.42■□□□□ 0.22
SYNE2-228ENST00000639659 SLC38A8A6NNN8 435 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 HEPACAM2A8MVW5 462 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 CHURC1-FNTBB4DL54 471 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 HIP1RO75146 1068 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 CXCL12P48061 93 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 SOX9P48436 509 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 FNTBP49356 437 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 NEK4P51957 841 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 SIM2Q14190 667 aaPredicted RBP16.41■□□□□ 0.22
SYNE2-228ENST00000639659 ZRSR1Q15695 479 aaKnown RBP16.41■□□□□ 0.22
SYNE2-228ENST00000639659 TPGS2Q68CL5 300 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 RNF19BQ6ZMZ0 732 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 APPL2Q8NEU8 664 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 FAM200AQ8TCP9 573 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 DEPDC1BQ8WUY9 529 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 DDX12PQ92771 950 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 TBC1D32Q96NH3 1257 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 PGLYRP2Q96PD5 576 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 TUBGCP4Q9UGJ1 667 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 YIPF1Q9Y548 306 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 TIMM13Q9Y5L4 95 aaPredicted RBP16.41■□□□□ 0.22
SYNE2-228ENST00000639659 PDCD11Q14690 1871 aaKnown RBP16.41■□□□□ 0.22
SYNE2-228ENST00000639659 NCANO14594 1321 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 F5P12259 2224 aa16.41■□□□□ 0.22
SYNE2-228ENST00000639659 TPRP12270 2363 aaKnown RBP16.4■□□□□ 0.22
SYNE2-228ENST00000639659 A0A1W2PRU2 124 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 E9PMD0 336 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 SLC16A4O15374 487 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 OR4Q2P0C623 313 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 MCF2P10911 925 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 TDGF1P13385 188 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 TGM1P22735 817 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 ANAPC15P60006 121 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 SPAG1Q07617 926 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 DMWDQ09019 674 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 RAD51AP2Q09MP3 1159 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 PPM1JQ5JR12 505 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 MPZL3Q6UWV2 235 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 MAP4K3Q8IVH8 894 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 CELF5Q8N6W0 485 aaKnown RBP16.4■□□□□ 0.22
SYNE2-228ENST00000639659 CHAMP1Q96JM3 812 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 ZBTB45Q96K62 511 aaPredicted RBP16.4■□□□□ 0.22
SYNE2-228ENST00000639659 SUSD3Q96L08 255 aa16.4■□□□□ 0.22
SYNE2-228ENST00000639659 AFF4Q9UHB7 1163 aaKnown RBP16.4■□□□□ 0.22
SYNE2-228ENST00000639659 SFI1A8K8P3 1242 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 PP2D1A8MPX8 630 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 MOSPD3O75425 235 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 KCNE1P15382 129 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 RPL9P32969 192 aaKnown RBP16.39■□□□□ 0.21
SYNE2-228ENST00000639659 ST3GAL1Q11201 340 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 STRN3Q13033 797 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 LRRC32Q14392 662 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 XKR4Q5GH76 650 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 ALKAL1Q6UXT8 129 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 CEP68Q76N32 757 aa16.39■□□□□ 0.21
SYNE2-228ENST00000639659 TAS1R3Q7RTX0 852 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms