RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 C11orf54Q9H0W9 315 aaPredicted RBP5.68□□□□□ -1.5
CD44-239ENST00000639002 CASS4Q9NQ75 786 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 TBCCD1Q9NVR7 557 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 LIMCH1Q9UPQ0 1083 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 ATP8A1Q9Y2Q0 1164 aa5.68□□□□□ -1.5
CD44-239ENST00000639002 MTO1Q9Y2Z2 717 aaKnown RBP5.68□□□□□ -1.5
CD44-239ENST00000639002 ERN1O75460 977 aaKnown RBP5.67□□□□□ -1.5
CD44-239ENST00000639002 C1QL1O75973 258 aa5.67□□□□□ -1.5
CD44-239ENST00000639002 ZNF37AP17032 561 aaPredicted RBP5.67□□□□□ -1.5
CD44-239ENST00000639002 ZNF280AP59817 542 aaPredicted RBP5.67□□□□□ -1.5
CD44-239ENST00000639002 SYCE2Q6PIF2 218 aa5.67□□□□□ -1.5
CD44-239ENST00000639002 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.67□□□□□ -1.5
CD44-239ENST00000639002 NECAB2Q7Z6G3 386 aa5.67□□□□□ -1.5
CD44-239ENST00000639002 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.67□□□□□ -1.5
CD44-239ENST00000639002 PTCD3Q96EY7 689 aaKnown RBP5.67□□□□□ -1.5
CD44-239ENST00000639002 TLR10Q9BXR5 811 aa5.67□□□□□ -1.5
CD44-239ENST00000639002 CCDC8Q9H0W5 538 aaPredicted RBP5.67□□□□□ -1.5
CD44-239ENST00000639002 KCTD5Q9NXV2 234 aa5.67□□□□□ -1.5
CD44-239ENST00000639002 MCM8Q9UJA3 840 aa5.67□□□□□ -1.5
CD44-239ENST00000639002 TLK1Q9UKI8 766 aa5.67□□□□□ -1.5
CD44-239ENST00000639002 GRM6O15303 877 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 HTRA2O43464 458 aaPredicted RBP5.66□□□□□ -1.5
CD44-239ENST00000639002 MT-CO1P00395 513 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 MRPS21P82921 87 aaKnown RBP5.66□□□□□ -1.5
CD44-239ENST00000639002 IL10RAQ13651 578 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 ERCC6LQ2NKX8 1250 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 C3orf36Q3SXR2 165 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 BOLLQ8N9W6 283 aaKnown RBP5.66□□□□□ -1.5
CD44-239ENST00000639002 IL17RDQ8NFM7 739 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 CAGE1Q8TC20 777 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 SSH3Q8TE77 659 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 TMX3Q96JJ7 454 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 MRGPRX4Q96LA9 322 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 MED15Q96RN5 788 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 TMX1Q9H3N1 280 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 CTTNBP2NLQ9P2B4 639 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 SPATA31A6Q5VVP1 1343 aa5.66□□□□□ -1.5
CD44-239ENST00000639002 HAUS5O94927 633 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 AGFG2O95081 481 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 MATN4O95460 622 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 IGLV2-14P01704 120 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 GATA3P23771 443 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 CDKN1CP49918 316 aaPredicted RBP5.65□□□□□ -1.5
CD44-239ENST00000639002 CDC42EP1Q00587 391 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 CREMQ03060 361 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 MTMR1Q13613 665 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 PCBP2Q15366 365 aaKnown RBP eCLIP5.65□□□□□ -1.5
CD44-239ENST00000639002 UTP14CQ5TAP6 766 aaKnown RBP5.65□□□□□ -1.5
CD44-239ENST00000639002 SYDE2Q5VT97 1194 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 KIAA0895LQ68EN5 471 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 SP5Q6BEB4 398 aaPredicted RBP5.65□□□□□ -1.5
CD44-239ENST00000639002 NLGN4YQ8NFZ3 816 aaPredicted RBP5.65□□□□□ -1.5
CD44-239ENST00000639002 LRIG1Q96JA1 1093 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 RSAD1Q9HA92 442 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 SPC25Q9HBM1 224 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 SEMA4GQ9NTN9 838 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 TDP1Q9NUW8 608 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 MKS1Q9NXB0 559 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 TRHDEQ9UKU6 1024 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 SLC45A2Q9UMX9 530 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 PCDHB1Q9Y5F3 818 aa5.65□□□□□ -1.5
CD44-239ENST00000639002 SBNO2Q9Y2G9 1366 aa5.65□□□□□ -1.51
CD44-239ENST00000639002 KAT6AQ92794 2004 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 A0A1W2PS29 197 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 ACAP2Q15057 778 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 SF3B3Q15393 1217 aaKnown RBP5.64□□□□□ -1.51
CD44-239ENST00000639002 ABCB5Q2M3G0 1257 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 PABPC1LQ4VXU2 614 aaKnown RBP5.64□□□□□ -1.51
CD44-239ENST00000639002 COLGALT2Q8IYK4 626 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 COA7Q96BR5 231 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 KLHL32Q96NJ5 620 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 DUSP26Q9BV47 211 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 SERPINB13Q9UIV8 391 aa5.64□□□□□ -1.51
CD44-239ENST00000639002 KLHL33A6NCF5 533 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 CCDC154A6NI56 674 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 LRRC3CA6NJW4 275 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 GABRDO14764 452 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 SLC43A1O75387 559 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 CD38P28907 300 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 CACNA2D1P54289 1103 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 ELLP55199 621 aaPredicted RBP5.63□□□□□ -1.51
CD44-239ENST00000639002 MRPS35P82673 323 aaKnown RBP5.63□□□□□ -1.51
CD44-239ENST00000639002 HNRNPA0Q13151 305 aaKnown RBP5.63□□□□□ -1.51
CD44-239ENST00000639002 VWA1Q6PCB0 445 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 TMPRSS9Q7Z410 1059 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 RSPH3Q86UC2 560 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 NSUN7Q8NE18 718 aaKnown RBP5.63□□□□□ -1.51
CD44-239ENST00000639002 ACTRT2Q8TDY3 377 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 KAT5Q92993 513 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 HDAC10Q969S8 669 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 TEKT5Q96M29 485 aa5.63□□□□□ -1.51
CD44-239ENST00000639002 SETD1BQ9UPS6 1966 aaKnown RBP5.63□□□□□ -1.51
CD44-239ENST00000639002 TRGV11A0A075B6L2 103 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 SGTAO43765 313 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 IGSF3O75054 1194 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 SUN1O94901 812 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 SRGNP10124 158 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 MYBL2P10244 700 aa5.62□□□□□ -1.51
CD44-239ENST00000639002 MTHFD1P11586 935 aaKnown RBP5.62□□□□□ -1.51
CD44-239ENST00000639002 FOLR3P41439 243 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms