RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 HLA-DRAP01903 254 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 ABCB4P21439 1286 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 OAS2P29728 719 aaKnown RBP19.66■□□□□ 0.74
CLN3-263ENST00000637871 MATR3P43243 847 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLN3-263ENST00000637871 MAPK6Q16659 721 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 ZNF484Q5JVG2 852 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 ACAD10Q6JQN1 1059 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 CRELD2Q6UXH1 353 aaPredicted RBP19.66■□□□□ 0.74
CLN3-263ENST00000637871 MAATS1Q7Z4T9 603 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 SLC20A1Q8WUM9 679 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 PRPF31Q8WWY3 499 aaKnown RBP19.66■□□□□ 0.74
CLN3-263ENST00000637871 MTG1Q9BT17 334 aaPredicted RBP19.66■□□□□ 0.74
CLN3-263ENST00000637871 TARS2Q9BW92 718 aaKnown RBP19.66■□□□□ 0.74
CLN3-263ENST00000637871 NFKBIZQ9BYH8 718 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 SENP6Q9GZR1 1112 aaPredicted RBP19.66■□□□□ 0.74
CLN3-263ENST00000637871 WNT8AQ9H1J5 351 aa19.66■□□□□ 0.74
CLN3-263ENST00000637871 DMGDHQ9UI17 866 aaKnown RBP19.66■□□□□ 0.74
CLN3-263ENST00000637871 H3BRB1 525 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 PIK3CAP42336 1068 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 TNNT3P45378 269 aaPredicted RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 ATN1P54259 1190 aaPredicted RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 FMO1Q01740 532 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 WDR49Q8IV35 697 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 BRSK2Q8IWQ3 736 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 GOLGA6L1Q8N7Z2 621 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 ZNF516Q92618 1163 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 TSEN34Q9BSV6 310 aaKnown RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 IMPG2Q9BZV3 1241 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 CCDC113Q9H0I3 377 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 TUT1Q9H6E5 874 aaKnown RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 RNF216Q9NWF9 866 aaPredicted RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 PACSIN2Q9UNF0 486 aaPredicted RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 GRIN2DO15399 1336 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 MOXD2PA6NHM9 499 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 OGTO15294 1046 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 MAGEB2O15479 319 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 PSEN2P49810 448 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 NLRP11P59045 1033 aaKnown RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 LAMTOR4Q0VGL1 99 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 CUL1Q13616 776 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 MFSD10Q14728 455 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 PLCB4Q15147 1175 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 ALS2CLQ60I27 953 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 WHAMMQ8TF30 809 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 KAT5Q92993 513 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 TATDN2Q93075 761 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 FAXDC2Q96IV6 333 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 RNPEPQ9H4A4 650 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 OSGEPQ9NPF4 335 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 AVENQ9NQS1 362 aaPredicted RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 TOPORSQ9NS56 1045 aaPredicted RBP19.65■□□□□ 0.74
CLN3-263ENST00000637871 TAS2R14Q9NYV8 317 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 ERAP1Q9NZ08 941 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 CNTN6Q9UQ52 1028 aa19.65■□□□□ 0.74
CLN3-263ENST00000637871 GOLGA6L10A0A0M3HER8 536 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 DDX3YO15523 660 aaKnown RBP19.64■□□□□ 0.73
CLN3-263ENST00000637871 MCL1Q07820 350 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 BIRC3Q13489 604 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 SLC47A2Q86VL8 602 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 ANKLE1Q8NAG6 615 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 DDX1Q92499 740 aaKnown RBP19.64■□□□□ 0.73
CLN3-263ENST00000637871 ARHGEF26Q96DR7 871 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 VCPIP1Q96JH7 1222 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 GLT1D1Q96MS3 346 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 PCDHB18PQ96TA0 734 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 KRT12Q99456 494 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 PLVAPQ9BX97 442 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 PDE11AQ9HCR9 933 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 STARD7Q9NQZ5 370 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 HPCAL4Q9UM19 191 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 NOC2LQ9Y3T9 749 aaKnown RBP19.64■□□□□ 0.73
CLN3-263ENST00000637871 ALG6Q9Y672 507 aa19.64■□□□□ 0.73
CLN3-263ENST00000637871 KRIT1O00522 736 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 HEXIM1O94992 359 aaKnown RBP19.63■□□□□ 0.73
CLN3-263ENST00000637871 PRKCBP05771 671 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 COL6A1P12109 1028 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 KRT5P13647 590 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 ACOT2P49753 483 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 CLEC16AQ2KHT3 1053 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 NBPF20Q3BBV1 942 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 ZBTB10Q96DT7 871 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 RUNDC3BQ96NL0 473 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 ACO2Q99798 780 aaKnown RBP19.63■□□□□ 0.73
CLN3-263ENST00000637871 C11orf49Q9H6J7 331 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 LCMT1Q9UIC8 334 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 CNTNAP2Q9UHC6 1331 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 COL1A2P08123 1366 aa19.63■□□□□ 0.73
CLN3-263ENST00000637871 CCDC66A2RUB6 948 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 HAS3O00219 553 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 ACKR2O00590 384 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 MMEP08473 750 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 HIC1Q14526 733 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 KYAT1Q16773 422 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 FAM47CQ5HY64 1035 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 TDRD10Q5VZ19 366 aaKnown RBP19.62■□□□□ 0.73
CLN3-263ENST00000637871 TSHZ1Q6ZSZ6 1077 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 PALB2Q86YC2 1186 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 MREGQ8N565 214 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 TRAPPC12Q8WVT3 735 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 PSD3Q9NYI0 1048 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms