RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 UBQLN1Q9UMX0 589 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 IRAK3Q9Y616 596 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 PDCD11Q14690 1871 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 UNC80Q8N2C7 3258 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 SPTBN5Q9NRC6 3674 aaKnown RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 GOLGA6L3A6NEY3 463 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 I3L4J1 428 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 KIAA0391O15091 583 aaKnown RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 XPOTO43592 962 aaKnown RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 IL18RAPO95256 599 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 GLP2RO95838 553 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 CNPP09543 421 aaKnown RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 PRKCSHP14314 528 aaPredicted RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 CYP3A5P20815 502 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 CCNE1P24864 410 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 PRCPP42785 496 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 NDUFV1P49821 464 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 MRE11P49959 708 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 TPM4P67936 248 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 MYL5Q02045 173 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 TMEM132DQ14C87 1099 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 CLUL1Q15846 466 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 CENPPQ6IPU0 288 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 C11orf57Q6ZUT1 292 aaPredicted RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 BEST2Q8NFU1 509 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 VN1R2Q8NFZ6 395 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 GOLGA5Q8TBA6 731 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 RIN2Q8WYP3 895 aaPredicted RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 KLHL5Q96PQ7 755 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 ASB2Q96Q27 587 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 TTPALQ9BTX7 342 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 EMILIN2Q9BXX0 1053 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 CBX8Q9HC52 389 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 RBAKQ9NYW8 714 aaPredicted RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 HSPBP1Q9NZL4 362 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 BARX2Q9UMQ3 279 aaPredicted RBP10.68□□□□□ -0.7
CLN3-261ENST00000637686 MAPK8IP1Q9UQF2 711 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 SSX2IPQ9Y2D8 614 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 DERAQ9Y315 318 aa10.68□□□□□ -0.7
CLN3-261ENST00000637686 ZNF233A6NK53 670 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 BECN2A8MW95 431 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 TRAPPC3O43617 180 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 TBX10O75333 385 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 FGFR1OPO95684 399 aaKnown RBP10.67□□□□□ -0.7
CLN3-261ENST00000637686 CD44P16070 742 aaKnown RBP10.67□□□□□ -0.7
CLN3-261ENST00000637686 KLRC2P26717 231 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 LRPAP1P30533 357 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 CYP2J2P51589 502 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 KCNQ1P51787 676 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 ELAVL2Q12926 359 aaKnown RBP10.67□□□□□ -0.7
CLN3-261ENST00000637686 KCNC3Q14003 757 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 MYBPC2Q14324 1141 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 AAK1Q2M2I8 961 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 EDRF1Q3B7T1 1238 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 LEXMQ3ZCV2 418 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 RTP2Q5QGT7 225 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 SPATA1Q5VX52 437 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 PRSS55Q6UWB4 352 aaPredicted RBP10.67□□□□□ -0.7
CLN3-261ENST00000637686 TMEM184AQ6ZMB5 413 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 HS2ST1Q7LGA3 356 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 CBWD2Q8IUF1 395 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 BRSK2Q8IWQ3 736 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 EFCAB13Q8IY85 973 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 RDH13Q8NBN7 331 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.67□□□□□ -0.7
CLN3-261ENST00000637686 LNX1Q8TBB1 728 aaPredicted RBP10.67□□□□□ -0.7
CLN3-261ENST00000637686 RXFP1Q9HBX9 757 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 CLEC1BQ9P126 229 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 C2CD2Q9Y426 696 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 NUB1Q9Y5A7 615 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 HCFC2Q9Y5Z7 792 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 ANK1P16157 1881 aa10.67□□□□□ -0.7
CLN3-261ENST00000637686 GOLGA6L19H0YKK7 550 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 PDXKO00764 312 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 PPEF2O14830 753 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 TEX28O15482 410 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 EPCAMP16422 314 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 RPL17P18621 184 aaKnown RBP10.66□□□□□ -0.7
CLN3-261ENST00000637686 FGFR3P22607 806 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 TKTP29401 623 aaKnown RBP10.66□□□□□ -0.7
CLN3-261ENST00000637686 NCAPHQ15003 741 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 ZCWPW2Q504Y3 356 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 TJAP1Q5JTD0 557 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 C9orf57Q5W0N0 161 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 TTI2Q6NXR4 508 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.66□□□□□ -0.7
CLN3-261ENST00000637686 PPFIBP1Q86W92 1011 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 GLYCTKQ8IVS8 523 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 DHX40Q8IX18 779 aaKnown RBP10.66□□□□□ -0.7
CLN3-261ENST00000637686 C12orf56Q8IXR9 622 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 ZC3H3Q8IXZ2 948 aaKnown RBP10.66□□□□□ -0.7
CLN3-261ENST00000637686 GPR65Q8IYL9 337 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 SMYD4Q8IYR2 804 aaPredicted RBP10.66□□□□□ -0.7
CLN3-261ENST00000637686 XXYLT1Q8NBI6 393 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 SLC22A17Q8WUG5 538 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 NELFBQ8WX92 580 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 PIK3R5Q8WYR1 880 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 MSLNLQ96KJ4 702 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 FBXL18Q96ME1 805 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 TSG101Q99816 390 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms