RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 HOXC6P09630 235 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 RRM1P23921 792 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 AARSP49588 968 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-251ENST00000636853 PEX5P50542 639 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 GRB14Q14449 540 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 ZNF467Q7Z7K2 595 aaPredicted RBP16.72■□□□□ 0.27
CLN3-251ENST00000636853 CD101Q93033 1021 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 CAVIN3Q969G5 261 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 CELF4Q9BZC1 486 aaKnown RBP16.72■□□□□ 0.27
CLN3-251ENST00000636853 ERVK-5Q9HDB9 667 aa16.72■□□□□ 0.27
CLN3-251ENST00000636853 AGPSO00116 658 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 THAP12O43422 761 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 SMPD1P17405 629 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 CD58P19256 250 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 GGCXP38435 758 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 NSFP46459 744 aaKnown RBP16.71■□□□□ 0.27
CLN3-251ENST00000636853 GUCY2FP51841 1108 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 FKBP1BP68106 108 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 DDX42Q86XP3 938 aaKnown RBP eCLIP16.71■□□□□ 0.27
CLN3-251ENST00000636853 TMEM130Q8N3G9 435 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 WNT8AQ9H1J5 351 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 ANAPC7Q9UJX3 599 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 CNTN6Q9UQ52 1028 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 ANK1P16157 1881 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 GPR25O00155 361 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 TTI1O43156 1089 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 TMEM191BP0C7N4 346 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 CXCL8P10145 99 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 CAPN2P17655 700 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 PHKA2P46019 1235 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 CENPCQ03188 943 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 TRPC3Q13507 836 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 NPLOC4Q8TAT6 608 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 FAM71BQ8TC56 605 aa16.71■□□□□ 0.27
CLN3-251ENST00000636853 EMID1Q96A84 441 aaPredicted RBP16.71■□□□□ 0.27
CLN3-251ENST00000636853 PARK7Q99497 189 aaKnown RBP16.71■□□□□ 0.27
CLN3-251ENST00000636853 MROH7Q68CQ1 1323 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 GOLGA6BA6NDN3 693 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 H3BRB1 525 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 MAPK4P31152 587 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 SURF1Q15526 300 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 ZNF394Q53GI3 561 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 PLEKHH3Q7Z736 793 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 LINC01465Q8N7H1 131 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 CPB2Q96IY4 423 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 C11orf70Q9BRQ4 267 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 SLITRK6Q9H5Y7 841 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 TUT1Q9H6E5 874 aaKnown RBP16.7■□□□□ 0.26
CLN3-251ENST00000636853 MED4Q9NPJ6 270 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 TNFSF13BQ9Y275 285 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 MAGEB2O15479 319 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 PPFIA4O75335 1185 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 PYGMP11217 842 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 CTNNA1P35221 906 aaKnown RBP16.7■□□□□ 0.26
CLN3-251ENST00000636853 NOMO3P69849 1222 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 ACVR2BQ13705 512 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 HLTFQ14527 1009 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLN3-251ENST00000636853 SGSM1Q2NKQ1 1148 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 SCARA5Q6ZMJ2 495 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 MON1BQ7L1V2 547 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 UBR7Q8N806 425 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 CCDC26Q8TAB7 109 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 NAP1L3Q99457 506 aaPredicted RBP16.7■□□□□ 0.26
CLN3-251ENST00000636853 TINF2Q9BSI4 451 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 NFKBIZQ9BYH8 718 aa16.7■□□□□ 0.26
CLN3-251ENST00000636853 PRMT7Q9NVM4 692 aaPredicted RBP16.7■□□□□ 0.26
CLN3-251ENST00000636853 ADCY6O43306 1168 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 WEE2P0C1S8 567 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 POU5F1Q01860 360 aaKnown RBP16.69■□□□□ 0.26
CLN3-251ENST00000636853 FAM110CQ1W6H9 321 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 MTHFD1LQ6UB35 978 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 MAATS1Q7Z4T9 603 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 OR6J1Q8NGC5 347 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 EXOC4Q96A65 974 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 NIF3L1Q9GZT8 377 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 RPF1Q9H9Y2 349 aaKnown RBP16.69■□□□□ 0.26
CLN3-251ENST00000636853 AVENQ9NQS1 362 aaPredicted RBP16.69■□□□□ 0.26
CLN3-251ENST00000636853 CPA4Q9UI42 421 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 ADAM21Q9UKJ8 722 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 PCDHA3Q9Y5H8 950 aa16.69■□□□□ 0.26
CLN3-251ENST00000636853 B4GALT4O60513 344 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 RNF40O75150 1001 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 TNNC2P02585 160 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ECHS1P30084 290 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ZNF132P52740 706 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 NNTQ13423 1086 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 AMHR2Q16671 573 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ZNF699Q32M78 642 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 DUSP28Q4G0W2 176 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ZNF606Q8WXB4 792 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ANKRD36BP1Q96IX9 119 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 CISHQ9NSE2 258 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 KAT6AQ92794 2004 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 GOLGA6L10A0A0M3HER8 536 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 DAPK3O43293 454 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 MMP3P08254 477 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 KRT19P08727 400 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 MYBL1P10243 752 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 CTNNA2P26232 953 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 TMOD1P28289 359 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms