RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SPDYCQ5MJ68 293 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 FAM182AQ5T1J6 154 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 LIN9Q5TKA1 542 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 SRRM1Q8IYB3 904 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 SAMD3Q8N6K7 520 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 GPRASP2Q96D09 838 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 A1CFQ9NQ94 594 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 FGFR1OP2Q9NVK5 253 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 STBD1O95210 358 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 VNN1O95497 513 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 ETS1P14921 441 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 ITIH2P19823 946 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 CNGA2Q16280 664 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 NUGGCQ68CJ6 796 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 MIS18BP1Q6P0N0 1132 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 SCARA5Q6ZMJ2 495 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 MTMR14Q8NCE2 650 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF280CQ8ND82 737 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 DDX27Q96GQ7 796 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 STMN4Q9H169 189 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 NUB1Q9Y5A7 615 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 TTLL13PA6NNM8 815 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 PMM2O15305 246 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 GARTP22102 1010 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 MARK3P27448 753 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 MAP3K10Q02779 954 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 MAMLD1Q13495 774 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 CUL2Q13617 745 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ZACNQ401N2 412 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 DEFB132Q7Z7B7 95 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 CDR2LQ86X02 465 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 CYP4X1Q8N118 509 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 RBBP8NLQ8NC74 664 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ATL2Q8NHH9 583 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 OSBPL8Q9BZF1 889 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF148Q9UQR1 794 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ATXN2Q99700 1313 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 IFNB1P01574 187 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 C4BPAP04003 597 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 POTEJP0CG39 1038 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 SRGAP2CP0DJJ0 459 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 BRAFP15056 766 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 GTF2H1P32780 548 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 GMPSP49915 693 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 IZUMO3Q5VZ72 239 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF772Q68DY9 489 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ANKRD35Q8N283 1001 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 SLC7A3Q8WY07 619 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ZBED3Q96IU2 234 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF302Q9NR11 478 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 HOMER3Q9NSC5 361 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 MAP3K20Q9NYL2 800 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 CYP39A1Q9NYL5 469 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 ARHGAP28Q9P2N2 729 aa13.74□□□□□ -0.21
CCDC88A-214ENST00000621814 C5orf60A6NFR6 353 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 CCT8L1PA6NM43 557 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 SRRM3A6NNA2 597 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 GOLGA8SH3BPF8 625 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 GOLGA8MH3BSY2 632 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 PROSCO94903 275 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 TTC4O95801 387 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 CST3P01034 146 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 GLRA2P23416 452 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 TNFSF9P41273 254 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 DYNLT1P63172 113 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 NOP14P78316 857 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 DRP2Q13474 957 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 P3H1Q32P28 736 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 GNPTABQ3T906 1256 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 ABHD15Q6UXT9 468 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 DLK2Q6UY11 383 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 TRMT10CQ7L0Y3 403 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 ENOSF1Q7L5Y1 443 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 ARMC9Q7Z3E5 817 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 RHOT1Q8IXI2 618 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 GLIS1Q8NBF1 620 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 TMEM174Q8WUU8 243 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 CCT6BQ92526 530 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 C10orf88Q9H8K7 445 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 C17orf75Q9HAS0 396 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 WHRNQ9P202 907 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 PIAS1O75925 651 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 ZBTB7AO95365 584 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 EDN1P05305 212 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 ATP4AP20648 1035 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 XKR3Q5GH77 459 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 HIBCHQ6NVY1 386 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 CRELD2Q6UXH1 353 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 MON1BQ7L1V2 547 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 PNMA8AQ86V59 439 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 GRK7Q8WTQ7 553 aa13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF214Q9UL59 606 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-214ENST00000621814 POC1B-GALNT4F8VUJ3 575 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 WEE2P0C1S8 567 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 CETPP11597 493 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 PTPRAP18433 802 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 IVDP26440 423 aa13.72□□□□□ -0.21
CCDC88A-214ENST00000621814 BPIFB4P59827 614 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms