RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ITGB3P05106 788 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 PYGLP06737 847 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 WEE2P0C1S8 567 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 MORF4L2Q15014 288 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 TSGA10IPQ3SY00 556 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 ZNF484Q5JVG2 852 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 CYP4A22Q5TCH4 519 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 KRT80Q6KB66 452 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 STK33Q9BYT3 514 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 KDM4CQ9H3R0 1056 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 KIF17Q9P2E2 1029 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.97□□□□□ -0.49
CLIP1-219ENST00000620786 SPDYE5A6NIY4 337 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 RSPH10B2B2RC85 870 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 RSPH10BP0C881 870 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 FAM200BP0CF97 657 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 CCDC15Q0P6D6 951 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 EFTUD2Q15029 972 aaKnown RBP eCLIP11.97□□□□□ -0.494e-6■■□□□ 11.5
CLIP1-219ENST00000620786 SPDYE7PQ495Y7 208 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 DCAF6Q58WW2 860 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 SLC25A41Q8N5S1 370 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 SEPT8Q92599 483 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 FBXO28Q9NVF7 368 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.97□□□□□ -0.49
CLIP1-219ENST00000620786 ANGPTL2Q9UKU9 493 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 ANO9A1A5B4 782 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 DCTN3O75935 186 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 DDNO94850 711 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-219ENST00000620786 MMEP08473 750 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 YY1P25490 414 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 DEFB128Q7Z7B8 93 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 CNTNAP5Q8WYK1 1306 aa11.97□□□□□ -0.49
CLIP1-219ENST00000620786 DIAPH2O60879 1101 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 RALBP11234 206 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 NCAM1P13591 858 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 CDH18Q13634 790 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 GLRA4Q5JXX5 417 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 HIPK4Q8NE63 616 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 ACER1Q8TDN7 264 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 ELMO2Q96JJ3 720 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 DDX47Q9H0S4 455 aaKnown RBP11.96□□□□□ -0.49
CLIP1-219ENST00000620786 PCDHGB4Q9UN71 923 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 FRMPD1Q5SYB0 1578 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 MYMKA6NI61 221 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 PDHXO00330 501 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 EIF3DO15371 548 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLIP1-219ENST00000620786 NDUFS3O75489 264 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 LUC7L3O95232 432 aaKnown RBP11.96□□□□□ -0.49
CLIP1-219ENST00000620786 CHGBP05060 677 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 GFAPP14136 432 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 CASP8Q14790 479 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 TMEM132BQ14DG7 1078 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 AMHR2Q16671 573 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 NBPF9Q3BBW0 867 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 ANKMY2Q8IV38 441 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 LMTK2Q8IWU2 1503 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 BHMTQ93088 406 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 THEGQ9P2T0 379 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 TUBE1Q9UJT0 475 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 UBQLN1Q9UMX0 589 aaKnown RBP11.96□□□□□ -0.49
CLIP1-219ENST00000620786 CEP170BQ9Y4F5 1589 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-219ENST00000620786 CCDC78A2IDD5 438 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 ZC3H11AO75152 810 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLIP1-219ENST00000620786 PYGBP11216 843 aa11.96□□□□□ -0.49
CLIP1-219ENST00000620786 A0A1W2PQC6 194 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 OCM2P0CE71 109 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 OCMP0CE72 109 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 NPEPPSP55786 919 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 CDR2LQ86X02 465 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 FBXO41Q8TF61 875 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 ZDHHC15Q96MV8 337 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 KIFC3Q9BVG8 833 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 TMEM8AQ9HCN3 771 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 ZFATQ9P243 1243 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 FAM187AA6NFU0 413 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 GAS2O43903 313 aaKnown RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 URODP06132 367 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 HMOX2P30519 316 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 LAMB3Q13751 1172 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 PIGHQ14442 188 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 MAPRE1Q15691 268 aaKnown RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 CCDC157Q569K6 752 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 NBPF12Q5TAG4 269 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 SCFD1Q8WVM8 642 aa11.96□□□□□ -0.5
CLIP1-219ENST00000620786 TSPYL2Q9H2G4 693 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.96□□□□□ -0.5
CLIP1-219ENST00000620786 MBL2P11226 248 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-219ENST00000620786 PPP3CCP48454 512 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 MMP14P50281 582 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 SNRPFP62306 86 aaKnown RBP11.95□□□□□ -0.5
CLIP1-219ENST00000620786 EFHC1Q5JVL4 640 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 MAP1SQ66K74 1059 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-219ENST00000620786 FAM47EQ6ZV65 393 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 ATP6V0D2Q8N8Y2 350 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 PIP4K2CQ8TBX8 421 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 ASPSCR1Q9BZE9 553 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 TMEM117Q9H0C3 514 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 ARHGEF38Q9NXL2 777 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 TTLL13PA6NNM8 815 aa11.95□□□□□ -0.5
CLIP1-219ENST00000620786 VTNP04004 478 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms