RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DPP3Q9NY33 737 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 SIX4Q9UIU6 781 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 ITGA11Q9UKX5 1188 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 PRG3Q9Y2Y8 225 aaPredicted RBP21.3■■□□□ 1
UPF3A-211ENST00000618700 TMEM265A0A087WTH1 108 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 F8W810 466 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 TULP1O00294 542 aaPredicted RBP21.29■■□□□ 1
UPF3A-211ENST00000618700 KIF4AO95239 1232 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 TNNC2P02585 160 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 ALDH2P05091 517 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 ZNF18P17022 549 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 GTF2H1P32780 548 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 PPM1AP35813 382 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 EPC2Q52LR7 807 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 DCAF17Q5H9S7 520 aaPredicted RBP21.29■■□□□ 1
UPF3A-211ENST00000618700 TDRD10Q5VZ19 366 aaKnown RBP21.29■■□□□ 1
UPF3A-211ENST00000618700 C9orf57Q5W0N0 161 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 C15orf39Q6ZRI6 1047 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 TRAPPC11Q7Z392 1133 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 RABGGTAQ92696 567 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 PLVAPQ9BX97 442 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 FANCLQ9NW38 375 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 FAN1Q9Y2M0 1017 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 PCDHB12Q9Y5F1 795 aa21.29■■□□□ 1
UPF3A-211ENST00000618700 SMTNL1A8MU46 457 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 NT5C1B-RDH14C9J2C7 533 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 PPEF2O14830 753 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 C4BPAP04003 597 aaKnown RBP21.28■■□□□ 1
UPF3A-211ENST00000618700 ZACNQ401N2 412 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 SCARA3Q6AZY7 606 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 CD300LGQ6UXG3 332 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 C3orf58Q8NDZ4 430 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 FAM200AQ8TCP9 573 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 IGSF21Q96ID5 467 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 SPG21Q9NZD8 308 aa21.28■■□□□ 1
UPF3A-211ENST00000618700 KCNJ18B7U540 433 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 PIRO00625 290 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 STX10O60499 249 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 EFEMP2O95967 443 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 ITGB3P05106 788 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 ITGB1P05556 798 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 RB1P06400 928 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 GCLMP48507 274 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 KCNJ12Q14500 433 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 HSP90AA4PQ58FG1 418 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 TCERG1LQ5VWI1 586 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 DCLRE1AQ6PJP8 1040 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 SV2AQ7L0J3 742 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 COLEC11Q9BWP8 271 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 TMEM8AQ9HCN3 771 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 MAGEC2Q9UBF1 373 aaPredicted RBP21.27■■□□□ 1
UPF3A-211ENST00000618700 ADAM28Q9UKQ2 775 aa21.27■■□□□ 1
UPF3A-211ENST00000618700 B3GAT3O94766 335 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 VNN1O95497 513 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 IGFBP6P24592 240 aaPredicted RBP21.26■□□□□ 0.99
UPF3A-211ENST00000618700 EEF1GP26641 437 aaKnown RBP21.26■□□□□ 0.99
UPF3A-211ENST00000618700 POLR2BP30876 1174 aaKnown RBP21.26■□□□□ 0.99
UPF3A-211ENST00000618700 PLCB3Q01970 1234 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 CBWD6Q4V339 395 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 TCP11X2Q5H9J9 407 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 CBWD3Q5JTY5 395 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 CBWD5Q5RIA9 395 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 LRRC52Q8N7C0 313 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 KLHL23Q8NBE8 558 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 MTUS1Q9ULD2 1270 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.26■□□□□ 0.99
UPF3A-211ENST00000618700 TRANK1O15050 2925 aa21.26■□□□□ 0.99
UPF3A-211ENST00000618700 COL4A4P53420 1690 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-211ENST00000618700 PMM2O15305 246 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 FGF18O76093 207 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 MTIF2P46199 727 aaKnown RBP21.25■□□□□ 0.99
UPF3A-211ENST00000618700 AARSP49588 968 aaKnown RBP eCLIP21.25■□□□□ 0.99
UPF3A-211ENST00000618700 MXI1P50539 228 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 RBP5P82980 135 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 KRT39Q6A163 491 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 LUZP1Q86V48 1076 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 RNF168Q8IYW5 571 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-211ENST00000618700 FBXO22Q8NEZ5 403 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 C11orf84Q9BUA3 381 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-211ENST00000618700 VN1R3Q9BXE9 311 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 TTYH1Q9H313 450 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-211ENST00000618700 ZNF576Q9H609 170 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 AGAP1Q9UPQ3 857 aa21.25■□□□□ 0.99
UPF3A-211ENST00000618700 SCN1AP35498 2009 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 PLXNA4Q9HCM2 1894 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 EPOPA6NHQ4 379 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 BECN2A8MW95 431 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 CST3P01034 146 aaPredicted RBP21.24■□□□□ 0.99
UPF3A-211ENST00000618700 FMO5P49326 533 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 KCNH2Q12809 1159 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 BIRC3Q13489 604 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 MAN2A1Q16706 1144 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 FUT10Q6P4F1 479 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 HASPINQ8TF76 798 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 ARNTL2Q8WYA1 636 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 TMEM169Q96HH4 297 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 TUBGCP2Q9BSJ2 902 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 MMRN2Q9H8L6 949 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 CERS4Q9HA82 394 aa21.24■□□□□ 0.99
UPF3A-211ENST00000618700 LZTS1Q9Y250 596 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms