RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 KSR1Q8IVT5 923 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 FAM9CQ8IZT9 166 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 FARSBQ9NSD9 589 aaKnown RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 FAM172BPA6NC97 362 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 GARSP41250 739 aaKnown RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 HAND2P61296 217 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MPRIPQ6WCQ1 1025 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 TRIM69Q86WT6 500 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 YIPF2Q9BWQ6 316 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SLC12A6Q9UHW9 1150 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 STX8Q9UNK0 236 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 DLC1Q96QB1 1528 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SNPHO15079 494 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ZBTB11O95625 1053 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ZNF568Q3ZCX4 644 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 KIAA1755Q5JYT7 1200 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CCDC149Q6ZUS6 474 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ATF3P18847 181 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 LRRC14Q15048 493 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 RWDD4Q6NW29 188 aaKnown RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 HSPH1Q92598 858 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CNPY3Q9BT09 278 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 IRX2Q9BZI1 471 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 TMEM94Q12767 1356 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 LDHCP07864 332 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 PLOD1Q02809 727 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 DIS3L2Q8IYB7 885 aaKnown RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ALLCQ8N6M5 410 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 GTF3C2Q8WUA4 911 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 PNPLA3Q9NST1 481 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 LRP2BPQ9P2M1 347 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MLXQ9UH92 298 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 BPIFB4P59827 614 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 TNFAIP2Q03169 654 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MAPK6Q16659 721 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 TTC23LQ6PF05 361 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SETD3Q86TU7 594 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ERP44Q9BS26 406 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CCDC182A6NF36 153 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MTFR1Q15390 333 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ALFQ53S48 1182 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 DCAF17Q5H9S7 520 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 RNF19BQ6ZMZ0 732 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 NELFCDQ8IXH7 590 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CASKIN2Q8WXE0 1202 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 TLR7Q9NYK1 1049 aaKnown RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 STON1Q9Y6Q2 735 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MAP4K1Q92918 833 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 OTULINQ96BN8 352 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CDY2AQ9Y6F7 541 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CDY1Q9Y6F8 540 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ABCC4O15439 1325 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 PSMG1O95456 288 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 STARD3NLO95772 234 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 IYDQ6PHW0 289 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SPERTQ8NA61 448 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SYN2Q92777 582 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CITED4Q96RK1 184 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 TBC1D10AQ9BXI6 508 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MLXIPQ9HAP2 919 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ZNF277Q9NRM2 450 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MYO3AQ8NEV4 1616 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 USP32Q8NFA0 1604 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CCNG1P51959 295 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 EFTUD2Q15029 972 aaKnown RBP eCLIP5.18□□□□□ -1.583e-7■■■□□ 14.9
VPS13D-213ENST00000613099 NAB2Q15742 525 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 NSUN7Q8NE18 718 aaKnown RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 TRPV5Q9NQA5 729 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 GDF3Q9NR23 364 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 SERPINB13Q9UIV8 391 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 PTPN12Q05209 780 aaKnown RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 ZNF827Q17R98 1081 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 RIN3Q8TB24 985 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 TUFT1Q9NNX1 390 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 TSPAN4O14817 238 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 CDH2P19022 906 aaPredicted RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 CCNFP41002 786 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 SERPINH1P50454 418 aaKnown RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 ALDH18A1P54886 795 aaKnown RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 PRAMEP78395 509 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 ATP13A5Q4VNC0 1218 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 IFIT1BQ5T764 474 aaKnown RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 CASC4Q6P4E1 433 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 GGT6Q6P531 493 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 FAM124BQ9H5Z6 455 aaPredicted RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 C6orf50Q9HD87 102 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 KIF17Q9P2E2 1029 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 PCDHA12Q9UN75 941 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 PCDHGA10Q9Y5H3 936 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 H7C1W4 665 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 GRM1Q13255 1194 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 EPC2Q52LR7 807 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 LSM14AQ8ND56 463 aaKnown RBP5.18□□□□□ -1.58
VPS13D-213ENST00000613099 C7orf57Q8NEG2 295 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 TAMM41Q96BW9 452 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 PHACTR3Q96KR7 559 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 MKLN1Q9UL63 735 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 LAD1O00515 517 aa5.18□□□□□ -1.58
VPS13D-213ENST00000613099 HOXC8P31273 242 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms