RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 DDX12PQ92771 950 aa12.56□□□□□ -0.4
LINC00539-204ENST00000608957 TCHPQ9BT92 498 aa12.56□□□□□ -0.4
LINC00539-204ENST00000608957 TTPALQ9BTX7 342 aa12.56□□□□□ -0.4
LINC00539-204ENST00000608957 ZHX3Q9H4I2 956 aa12.56□□□□□ -0.4
LINC00539-204ENST00000608957 DACH1Q9UI36 760 aa12.56□□□□□ -0.4
LINC00539-204ENST00000608957 TTC26A0AVF1 554 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 PPP1R37O75864 691 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 B3GAT3O94766 335 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 KRT18P05783 430 aaKnown RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 TKTP29401 623 aaKnown RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 YARSP54577 528 aaKnown RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 ASIC1P78348 528 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 GTF2BQ00403 316 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 SPAG1Q07617 926 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 KCNB1Q14721 858 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 PSMD5Q16401 504 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 CNNM4Q6P4Q7 775 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 DCLRE1AQ6PJP8 1040 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 MAP4K3Q8IVH8 894 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 CMASQ8NFW8 434 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 CCDC47Q96A33 483 aaKnown RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 ZNF707Q96C28 371 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 BICD1Q96G01 975 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 DDX27Q96GQ7 796 aaKnown RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 RIPOR3Q96MK2 946 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 UROC1Q96N76 676 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 NECTIN4Q96NY8 510 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 BPIFA3Q9BQP9 254 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 STRA6Q9BX79 667 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 FGFBP2Q9BYJ0 223 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 CBX8Q9HC52 389 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 TOPORSQ9NS56 1045 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-204ENST00000608957 TUBGCP4Q9UGJ1 667 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 KCNG1Q9UIX4 513 aa12.55□□□□□ -0.4
LINC00539-204ENST00000608957 A0A0B4J269 797 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 CCDC195A0A1B0GUA6 201 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 PRR33A8MZF0 331 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 H0YCG3 227 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 PODXLO00592 558 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 CLDN3O15551 220 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 KLRC4O43908 158 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 N4BP1O75113 896 aaKnown RBP12.54□□□□□ -0.4
LINC00539-204ENST00000608957 TBCAO75347 108 aaKnown RBP12.54□□□□□ -0.4
LINC00539-204ENST00000608957 ADRB2P07550 413 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 BMP6P22004 513 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 LIG4P49917 911 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 GUCY2FP51841 1108 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 ZXDAP98168 799 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 KCNA1Q09470 495 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 ZBTB6Q15916 424 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 ENOX2Q16206 610 aaKnown RBP12.54□□□□□ -0.4
LINC00539-204ENST00000608957 KMT5BQ4FZB7 885 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 ATAT1Q5SQI0 421 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.54□□□□□ -0.4
LINC00539-204ENST00000608957 UNC13DQ70J99 1090 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 MLKLQ8NB16 471 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 EDAQ92838 391 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 SMOC2Q9H3U7 446 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 ST6GALNAC4Q9H4F1 302 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 EXOC1Q9NV70 894 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 MTRRQ9UBK8 725 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 FBXW11Q9UKB1 542 aa12.54□□□□□ -0.4
LINC00539-204ENST00000608957 FRMD3A2A2Y4 597 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 LACTBL1A8MY62 500 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 HNRNPDLO14979 420 aaKnown RBP12.53□□□□□ -0.4
LINC00539-204ENST00000608957 OGTO15294 1046 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 RHOBTB3O94955 611 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 CLTAP09496 248 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 MATR3P43243 847 aaKnown RBP eCLIP12.53□□□□□ -0.4
LINC00539-204ENST00000608957 CASP5P51878 434 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 ELAVL2Q12926 359 aaKnown RBP12.53□□□□□ -0.4
LINC00539-204ENST00000608957 PTPN21Q16825 1174 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 UVSSAQ2YD98 709 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 ZNF658Q5TYW1 1059 aaPredicted RBP12.53□□□□□ -0.4
LINC00539-204ENST00000608957 C15orf39Q6ZRI6 1047 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 HFE2Q6ZVN8 426 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 ZNF720Q7Z2F6 126 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 LUZP1Q86V48 1076 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 KREMEN2Q8NCW0 462 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 ZSWIM2Q8NEG5 633 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 HDAC7Q8WUI4 952 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 SLC38A7Q9NVC3 462 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 TBC1D7Q9P0N9 293 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 NR2E1Q9Y466 385 aa12.53□□□□□ -0.4
LINC00539-204ENST00000608957 PVALEFA0A1B0GWK0 134 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 SPDYE4A6NLX3 237 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 PPEF2O14830 753 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 TBC1D4O60343 1298 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 ZMYND10O75800 440 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 C1RP00736 705 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 ASGR2P07307 311 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 ADSSP30520 456 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 OR1D2P34982 312 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 CREMQ03060 361 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 IQCB1Q15051 598 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 CT47A1Q5JQC4 288 aaPredicted RBP12.52□□□□□ -0.41
LINC00539-204ENST00000608957 DHX40Q8IX18 779 aaKnown RBP12.52□□□□□ -0.41
LINC00539-204ENST00000608957 ZDHHC14Q8IZN3 488 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 AOPEPQ8N6M6 819 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms