RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CATSPER3Q86XQ3 398 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 DIS3L2Q8IYB7 885 aaKnown RBP6.9□□□□□ -1.3
CUX1-220ENST00000607092 FEZF2Q8TBJ5 459 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 CSGALNACT1Q8TDX6 532 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 HASPINQ8TF76 798 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 FAM3CQ92520 227 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 MCRS1Q96EZ8 462 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 DRC1Q96MC2 740 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 PPP1R10Q96QC0 940 aaKnown RBP6.9□□□□□ -1.3
CUX1-220ENST00000607092 MTMR9Q96QG7 549 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 TSPAN18Q96SJ8 248 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 PAAF1Q9BRP4 392 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 RPP25Q9BUL9 199 aaKnown RBP6.9□□□□□ -1.3
CUX1-220ENST00000607092 CYP4F11Q9HBI6 524 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 HEBP1Q9NRV9 189 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 AFF4Q9UHB7 1163 aaKnown RBP6.9□□□□□ -1.3
CUX1-220ENST00000607092 TPCN1Q9ULQ1 816 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 TNFSF13BQ9Y275 285 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 GDAQ9Y2T3 454 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 ASB3Q9Y575 518 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 PIAS3Q9Y6X2 628 aa6.9□□□□□ -1.3
CUX1-220ENST00000607092 CCDC163A0A0D9SF12 145 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 SMIM28A0A1B0GU29 152 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 H0YCG3 227 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 PODXLO00592 558 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 LRRN2O75325 713 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 MCF2P10911 925 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 KCNE1P15382 129 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 CD72P21854 359 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 ABCD1P33897 745 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 TRAPPC10P48553 1259 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 CLCNKBP51801 687 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 SMTNP53814 917 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 FOXK1P85037 733 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 DMWDQ09019 674 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 NR5A1Q13285 461 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 DMP1Q13316 513 aaPredicted RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 SIM2Q14190 667 aaPredicted RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 ST3GAL2Q16842 350 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 ARHGAP29Q52LW3 1261 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 IL31Q6EBC2 164 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 TANGO2Q6ICL3 276 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 MAEAQ7L5Y9 396 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 LONP2Q86WA8 852 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 RALGPS2Q86X27 583 aaPredicted RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 MAP4K3Q8IVH8 894 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 NOSTRINQ8IVI9 506 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 MFSD6LQ8IWD5 586 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 ING5Q8WYH8 240 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 RABGGTAQ92696 567 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 LOXL4Q96JB6 756 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 CHAMP1Q96JM3 812 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 AIFM3Q96NN9 605 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 ASB16Q96NS5 453 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 CNTNAP3BQ96NU0 1288 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 ACAP3Q96P50 834 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 CORO1BQ9BR76 489 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 TCHPQ9BT92 498 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 TIPINQ9BVW5 301 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 MRPL4Q9BYD3 311 aaKnown RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 CNTNAP3Q9BZ76 1288 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 CCDC113Q9H0I3 377 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 SLITRK6Q9H5Y7 841 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 LMAN1LQ9HAT1 526 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 ZNF334Q9HCZ1 680 aaPredicted RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 OBP2AQ9NY56 170 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 NDRG2Q9UN36 371 aaKnown RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 MTF2Q9Y483 593 aaPredicted RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 INSL5Q9Y5Q6 135 aa6.89□□□□□ -1.31
CUX1-220ENST00000607092 FASNP49327 2511 aaKnown RBP6.89□□□□□ -1.31
CUX1-220ENST00000607092 BAHCC1Q9P281 2608 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 PKD1L2Q7Z442 2459 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 MYH15Q9Y2K3 1946 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 ARID2Q68CP9 1835 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 WDR27A2RRH5 827 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 OR6C75A6NL08 312 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 TRIM66O15016 1216 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 CHADO15335 359 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 ATG13O75143 517 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 AKAP3O75969 853 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 OR52Z1P0C646 297 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 SPATA31C1P0DKV0 1188 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 CPB1P15086 417 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 CEBPBP17676 345 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 LIG1P18858 919 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 TKTP29401 623 aaKnown RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 GDI1P31150 447 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 ALDH1A3P47895 512 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 KPNA1P52294 538 aaPredicted RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 EPHB3P54753 998 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 EPHA5P54756 1037 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 STRN3Q13033 797 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 PTGDRQ13258 359 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 GNL2Q13823 731 aaKnown RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 MRPL58Q14197 206 aaKnown RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 PDIA5Q14554 519 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 ZNF568Q3ZCX4 644 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 CTXN3Q4LDR2 81 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 ARHGAP15Q53QZ3 475 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms