RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.57□□□□□ -0.4
VRK3-223ENST00000601341 DHX38Q92620 1227 aaKnown RBP12.57□□□□□ -0.4
VRK3-223ENST00000601341 TMEM117Q9H0C3 514 aa12.57□□□□□ -0.4
VRK3-223ENST00000601341 TRPV6Q9H1D0 765 aa12.57□□□□□ -0.4
VRK3-223ENST00000601341 RPF1Q9H9Y2 349 aaKnown RBP12.57□□□□□ -0.4
VRK3-223ENST00000601341 INTUQ9ULD6 942 aa12.57□□□□□ -0.4
VRK3-223ENST00000601341 PIN4Q9Y237 131 aaKnown RBP12.57□□□□□ -0.4
VRK3-223ENST00000601341 NOC2LQ9Y3T9 749 aaKnown RBP12.57□□□□□ -0.4
VRK3-223ENST00000601341 BRCA2P51587 3418 aa12.57□□□□□ -0.4
VRK3-223ENST00000601341 TRIP12Q14669 1992 aaPredicted RBP12.57□□□□□ -0.4
VRK3-223ENST00000601341 B4GALT4O60513 344 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 IL18RAPO95256 599 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 MOCS3O95396 460 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 OSTNP61366 133 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 KLHL30Q0D2K2 578 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 NNTQ13423 1086 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 ENOX2Q16206 610 aaKnown RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 TRIM71Q2Q1W2 868 aaKnown RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 FAM26DQ5JW98 314 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 SV2AQ7L0J3 742 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 FAM228AQ86W67 206 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 CEP120Q8N960 986 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 EIF1ADQ8N9N8 165 aaKnown RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 CGRRF1Q99675 332 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 TLR10Q9BXR5 811 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 TOPORSQ9NS56 1045 aaPredicted RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 TFR2Q9UP52 801 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 COQ4Q9Y3A0 265 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 GPR182O15218 404 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 NPTXRO95502 500 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 GRM5P41594 1212 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 GFPT1Q06210 699 aaPredicted RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 ASIC2Q16515 512 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 EPC2Q52LR7 807 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 CCDC181Q5TID7 509 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 KLHDC7AQ5VTJ3 777 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 DPY19L2P1Q6NXN4 242 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 EMBQ6PCB8 327 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 WDR49Q8IV35 697 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 USP38Q8NB14 1042 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 FBXL13Q8NEE6 735 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 AENQ8WTP8 325 aaKnown RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 FAM212AQ96EL1 285 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 CAPZA3Q96KX2 299 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 ACAP3Q96P50 834 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 TRIM6Q9C030 488 aaPredicted RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 INTS2Q9H0H0 1204 aaKnown RBP12.56□□□□□ -0.4
VRK3-223ENST00000601341 HPCAL4Q9UM19 191 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 ST3GAL5Q9UNP4 418 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 SQORQ9Y6N5 450 aa12.56□□□□□ -0.4
VRK3-223ENST00000601341 A0A0A6YYK5 440 aaPredicted RBP12.55□□□□□ -0.4
VRK3-223ENST00000601341 ZNF185O15231 689 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 CXCL8P10145 99 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 CKBP12277 381 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 ACTN1P12814 892 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 UCHL3P15374 230 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 WNT7BP56706 349 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 NFX1Q12986 1120 aaKnown RBP12.55□□□□□ -0.4
VRK3-223ENST00000601341 ZACNQ401N2 412 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 FBXO47Q5MNV8 452 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 C15orf39Q6ZRI6 1047 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 VPS36Q86VN1 386 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 TMEM192Q8IY95 271 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 LMO3Q8TAP4 145 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 ZNF516Q92618 1163 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 ASB7Q9H672 318 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 NLRC4Q9NPP4 1024 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 CHST12Q9NRB3 414 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 FRMPD3Q5JV73 1810 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 MROH7Q68CQ1 1323 aa12.55□□□□□ -0.4
VRK3-223ENST00000601341 DNAH12Q6ZR08 3092 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 C4BPAP04003 597 aaKnown RBP12.54□□□□□ -0.4
VRK3-223ENST00000601341 RFX1P22670 979 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 GJA8P48165 433 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 EPHB4P54760 987 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 APBA1Q02410 837 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 BIRC3Q13489 604 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 DUOXA2Q1HG44 320 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 ZNF618Q5T7W0 954 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 LMBRD2Q68DH5 695 aaPredicted RBP12.54□□□□□ -0.4
VRK3-223ENST00000601341 IRF2BP2Q7Z5L9 587 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 CD302Q8IX05 232 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 FAM126BQ8IXS8 530 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 GOLGA6L1Q8N7Z2 621 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 CAVIN3Q969G5 261 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 EIF2AQ9BY44 585 aaKnown RBP12.54□□□□□ -0.4
VRK3-223ENST00000601341 SIX2Q9NPC8 291 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 RAB20Q9NX57 234 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 STIM2Q9P246 746 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 APEX2Q9UBZ4 518 aa12.54□□□□□ -0.4
VRK3-223ENST00000601341 CAPN2P17655 700 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 YARSP54577 528 aaKnown RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 PAK2Q13177 524 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 BFSP2Q13515 415 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 RAPGEF1Q13905 1077 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 MEI1Q5TIA1 1274 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TWF2Q6IBS0 349 aaKnown RBP12.53□□□□□ -0.4
VRK3-223ENST00000601341 ANKLE1Q8NAG6 615 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 TAS1R2Q8TE23 839 aa12.53□□□□□ -0.4
VRK3-223ENST00000601341 CALR3Q96L12 384 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms