RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ACO2Q99798 780 aaKnown RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 HERC2P3Q9BVR0 1158 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 C2orf40Q9H1Z8 148 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 ZHX3Q9H4I2 956 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 PDZD7Q9H5P4 517 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 MRPL44Q9H9J2 332 aaKnown RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 PRMT7Q9NVM4 692 aaPredicted RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 HOOK1Q9UJC3 728 aaKnown RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 TNFSF13BQ9Y275 285 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 GIT1Q9Y2X7 761 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 DMDP11532 3685 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 VWA8A3KMH1 1905 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 TISP43B9A030 160 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 ANKRD63C9JTQ0 380 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 H0YCG3 227 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 BIN1O00499 593 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 PTGESO14684 152 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 MEFVO15553 781 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 NARSO43776 548 aaKnown RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 FAM189A1O60320 539 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 PRPF6O94906 941 aaKnown RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 RPL17P18621 184 aaKnown RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 MTHFRP42898 656 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 PMS1P54277 932 aaKnown RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 ALCAMQ13740 583 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 NAB2Q15742 525 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 ST3GAL2Q16842 350 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 CENPPQ6IPU0 288 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 SLC27A1Q6PCB7 646 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 ZPBP2Q6X784 338 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 GPR149Q86SP6 731 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 GLYCTKQ8IVS8 523 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 SMYD4Q8IYR2 804 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 ZDHHC14Q8IZN3 488 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 HASPINQ8TF76 798 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 CCDC51Q96ER9 411 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 RPS6KC1Q96S38 1066 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 TARS2Q9BW92 718 aaKnown RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 MRPL17Q9NRX2 175 aaKnown RBP9.54□□□□□ -0.88
TRIM28-214ENST00000600840 CHST7Q9NS84 486 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 EXOC1Q9NV70 894 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 DMAC2Q9NW81 257 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 RMND1Q9NWS8 449 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 SNTG2Q9NY99 539 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 PARP2Q9UGN5 583 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 PCDHB13Q9Y5F0 798 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 VPS13AQ96RL7 3174 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 DOCK8Q8NF50 2099 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 PHLPP2Q6ZVD8 1323 aa9.54□□□□□ -0.88
TRIM28-214ENST00000600840 NCOR2Q9Y618 2525 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 EP300Q09472 2414 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 A0A0B4J269 797 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 CASTOR2A6NHX0 329 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 K7ENM7 598 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 RFPL2O75678 378 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 GCNT3O95395 438 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 PRKCBP05771 671 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 NLRP12P59046 1061 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 DSG1Q02413 1049 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 BMS1Q14692 1282 aaKnown RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 MAPK6Q16659 721 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 KNOP1Q1ED39 458 aaKnown RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 ATAT1Q5SQI0 421 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 FUT10Q6P4F1 479 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 FOXR2Q6PJQ5 311 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 PRSS55Q6UWB4 352 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 PALB2Q86YC2 1186 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 ZBTB8OSQ8IWT0 167 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 C12orf56Q8IXR9 622 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 ZC3H3Q8IXZ2 948 aaKnown RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 ZBTB45Q96K62 511 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 NECTIN4Q96NY8 510 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 RTP3Q9BQQ7 232 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 EMILIN2Q9BXX0 1053 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 GTPBP4Q9BZE4 634 aaKnown RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 TRIM6Q9C030 488 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-214ENST00000600840 RXFP1Q9HBX9 757 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 UBN1Q9NPG3 1134 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 MAN1C1Q9NR34 630 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 DZANK1Q9NVP4 752 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 FBXL21Q9UKT6 434 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 TRAF3IP3Q9Y228 551 aa9.53□□□□□ -0.88
TRIM28-214ENST00000600840 KRBA1A5PL33 1030 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 STK25O00506 426 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 PDXKO00764 312 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ADAM12O43184 909 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 RECQL4O94761 1208 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 URODP06132 367 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ADRB2P07550 413 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 CFHP08603 1231 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ABCD1P33897 745 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 GLUD2P49448 558 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 MCL1Q07820 350 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 NCBP1Q09161 790 aaKnown RBP9.52□□□□□ -0.89
TRIM28-214ENST00000600840 DNAH14Q0VDD8 3507 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 GRIK3Q13003 919 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 PRPF4BQ13523 1007 aaKnown RBP9.52□□□□□ -0.89
TRIM28-214ENST00000600840 NFIL3Q16649 462 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 DPCR1Q3MIW9 517 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ZSCAN23Q3MJ62 389 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms