RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 FGFR3P22607 806 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 PSMC2P35998 433 aaKnown RBP14.86□□□□□ -0.03
VRK3-219ENST00000600137 LILRA4P59901 499 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 DSG1Q02413 1049 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 ENPEPQ07075 957 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 PAK1Q13153 545 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 STIM1Q13586 685 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 COL19A1Q14993 1142 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 DUOXA2Q1HG44 320 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 C15orf39Q6ZRI6 1047 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 TRAPPC11Q7Z392 1133 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 TMC7Q7Z402 723 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 IRF2BP1Q8IU81 584 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 SUSD3Q96L08 255 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 MTMR12Q9C0I1 747 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 NGRNQ9NPE2 291 aaKnown RBP14.86□□□□□ -0.03
VRK3-219ENST00000600137 CTNND2Q9UQB3 1225 aa14.86□□□□□ -0.03
VRK3-219ENST00000600137 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.86□□□□□ -0.03
VRK3-219ENST00000600137 M0QZQ0 153 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 CXCL14O95715 111 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 DLATP10515 647 aaKnown RBP14.85□□□□□ -0.03
VRK3-219ENST00000600137 GTF2F1P35269 517 aaKnown RBP eCLIP14.85□□□□□ -0.03
VRK3-219ENST00000600137 KCNC3Q14003 757 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 MRPL58Q14197 206 aaKnown RBP14.85□□□□□ -0.03
VRK3-219ENST00000600137 PTPN14Q15678 1187 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 PTPROQ16827 1216 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 USP41Q3LFD5 358 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 TCEAL5Q5H9L2 206 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 RTP2Q5QGT7 225 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 FAM171A1Q5VUB5 890 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 PDE12Q6L8Q7 609 aaKnown RBP14.85□□□□□ -0.03
VRK3-219ENST00000600137 CAVIN1Q6NZI2 390 aaKnown RBP14.85□□□□□ -0.03
VRK3-219ENST00000600137 FILIP1Q7Z7B0 1213 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 GPR65Q8IYL9 337 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 FAM186BQ8IYM0 893 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 LNX1Q8TBB1 728 aaPredicted RBP14.85□□□□□ -0.03
VRK3-219ENST00000600137 CACTINQ8WUQ7 758 aaKnown RBP14.85□□□□□ -0.03
VRK3-219ENST00000600137 TCF25Q9BQ70 676 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 RXFP1Q9HBX9 757 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 RWDD2AQ9UIY3 292 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 FRMD4BQ9Y2L6 1034 aa14.85□□□□□ -0.03
VRK3-219ENST00000600137 IKBKBO14920 756 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 TBC1D4O60343 1298 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 CSPG5O95196 566 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 VNN1O95497 513 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 ITGB3P05106 788 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 TNNI1P19237 187 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 TKTP29401 623 aaKnown RBP14.84□□□□□ -0.03
VRK3-219ENST00000600137 POLR2BP30876 1174 aaKnown RBP14.84□□□□□ -0.03
VRK3-219ENST00000600137 VAMP7P51809 220 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 PPP3CAQ08209 521 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 HYAL1Q12794 435 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 NFKBIBQ15653 356 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 PLPP4Q5VZY2 271 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 RSPO2Q6UXX9 243 aaPredicted RBP14.84□□□□□ -0.03
VRK3-219ENST00000600137 INTS8Q75QN2 995 aaKnown RBP14.84□□□□□ -0.03
VRK3-219ENST00000600137 LIMS2Q7Z4I7 341 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 CSGALNACT2Q8N6G5 542 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 CEP63Q96MT8 703 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 TSG101Q99816 390 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 FUCA2Q9BTY2 467 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 NSUN3Q9H649 340 aaKnown RBP14.84□□□□□ -0.03
VRK3-219ENST00000600137 STK39Q9UEW8 545 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 AGAP1Q9UPQ3 857 aa14.84□□□□□ -0.03
VRK3-219ENST00000600137 SF3B1O75533 1304 aaKnown RBP eCLIP14.84□□□□□ -0.03
VRK3-219ENST00000600137 BICDL2A1A5D9 508 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 SLC16A3O15427 465 aaKnown RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 TMEM191BP0C7N4 346 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 TRIM49P0CI25 452 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 TRIM49CP0CI26 452 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 ERCC5P28715 1186 aaPredicted RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 MARSP56192 900 aaKnown RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 ELAVL2Q12926 359 aaKnown RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 BFSP1Q12934 665 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 SMC1AQ14683 1233 aaKnown RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 CTC1Q2NKJ3 1217 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 ZACNQ401N2 412 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 CT47A1Q5JQC4 288 aaPredicted RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 TDRD10Q5VZ19 366 aaKnown RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 PRSS55Q6UWB4 352 aaPredicted RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 SV2AQ7L0J3 742 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 LRRC52Q8N7C0 313 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 VN1R2Q8NFZ6 395 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 MICAL1Q8TDZ2 1067 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 PIK3R5Q8WYR1 880 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 ANKRD36BP1Q96IX9 119 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 FNBP1Q96RU3 617 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 CLSTN3Q9BQT9 956 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 TTPALQ9BTX7 342 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 SRRTQ9BXP5 876 aaKnown RBP14.83□□□□□ -0.04
VRK3-219ENST00000600137 XYLT2Q9H1B5 865 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 ENTPD7Q9NQZ7 604 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 ITGA11Q9UKX5 1188 aa14.83□□□□□ -0.04
VRK3-219ENST00000600137 XIRP2A4UGR9 3374 aa14.82□□□□□ -0.04
VRK3-219ENST00000600137 PER2O15055 1255 aa14.82□□□□□ -0.04
VRK3-219ENST00000600137 ADAM12O43184 909 aa14.82□□□□□ -0.04
VRK3-219ENST00000600137 CLASP2O75122 1294 aaKnown RBP14.82□□□□□ -0.04
VRK3-219ENST00000600137 LRRN2O75325 713 aa14.82□□□□□ -0.04
VRK3-219ENST00000600137 CNPP09543 421 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms