RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	POU5F1B	Q06416	359 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	CWF19L1	Q69YN2	538 aa	Known RBP	13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	HAUS6	Q7Z4H7	955 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	HACE1	Q8IYU2	909 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	FLCN	Q8NFG4	579 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	SPIRE2	Q8WWL2	714 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	GAD1	Q99259	594 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	TSG101	Q99816	390 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	EIF2A	Q9BY44	585 aa	Known RBP	13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	TRIM6	Q9C030	488 aa	Predicted RBP	13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	KCTD10	Q9H3F6	313 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	C17orf75	Q9HAS0	396 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	KCNK12	Q9HB15	430 aa		13.79	□□□□□ -0.2
UPF1-208	ENST00000600012	LRRIQ4	A6NIV6	560 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	TEX28	O15482	410 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	EFEMP2	O95967	443 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	AOC1	P19801	751 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	SCNN1G	P51170	649 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	SMTN	P53814	917 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	DSG1	Q02413	1049 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	LRRC63	Q05C16	580 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	CAPS	Q13938	189 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	KNOP1	Q1ED39	458 aa	Known RBP	13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	ZCWPW2	Q504Y3	356 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	KIAA0319	Q5VV43	1072 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	STXBP4	Q6ZWJ1	553 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	CPB2	Q96IY4	423 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	ZFP42	Q96MM3	310 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	STRA6	Q9BX79	667 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	RNF39	Q9H2S5	420 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	RXFP1	Q9HBX9	757 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	WDR6	Q9NNW5	1121 aa	Known RBP	13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	FBXL21	Q9UKT6	434 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	GIT1	Q9Y2X7	761 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	HES2	Q9Y543	173 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	PCDHB13	Q9Y5F0	798 aa		13.78	□□□□□ -0.2
UPF1-208	ENST00000600012	CCDC195	A0A1B0GUA6	201 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	PRR23A	A6NEV1	266 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	CLUH	O75153	1309 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	C1R	P00736	705 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	ZNF18	P17022	549 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	ARF4	P18085	180 aa	Predicted RBP	13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	GBP2	P32456	591 aa	Predicted RBP	13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	NAMPT	P43490	491 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	GTF2B	Q00403	316 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	MBTD1	Q05BQ5	628 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	ALCAM	Q13740	583 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	PPP2R5A	Q15172	486 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	AMHR2	Q16671	573 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	CDKAL1	Q5VV42	579 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	ASCL5	Q7RTU5	278 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	TAS1R1	Q7RTX1	841 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	GPR65	Q8IYL9	337 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	CSGALNACT2	Q8N6G5	542 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	TMEM161B	Q8NDZ6	487 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	HDAC7	Q8WUI4	952 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	EEF2KMT	Q96G04	330 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	SNX27	Q96L92	541 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	RTP3	Q9BQQ7	232 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	COLEC11	Q9BWP8	271 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	APOL6	Q9BWW8	343 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	SRRT	Q9BXP5	876 aa	Known RBP	13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	NFKBIZ	Q9BYH8	718 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	NXF3	Q9H4D5	531 aa	Known RBP	13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	ST6GALNAC4	Q9H4F1	302 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	MIOS	Q9NXC5	875 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	ARHGAP28	Q9P2N2	729 aa		13.77	□□□□□ -0.21
UPF1-208	ENST00000600012	TGFB1I1	O43294	461 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	N4BP1	O75113	896 aa	Known RBP	13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	PAPLN	O95428	1278 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	NPR3	P17342	541 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	FANCC	Q00597	558 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	CREM	Q03060	361 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	GRIK3	Q13003	919 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	FUT10	Q6P4F1	479 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	TAS1R3	Q7RTX0	852 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	SYCP3	Q8IZU3	236 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	SIX5	Q8N196	739 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	DEPTOR	Q8TB45	409 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	SMG7	Q92540	1137 aa	Known RBP	13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	NKD2	Q969F2	451 aa	Predicted RBP	13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	HVCN1	Q96D96	273 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	ACCS	Q96QU6	501 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	NTPCR	Q9BSD7	190 aa	Known RBP	13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	PLEKHA4	Q9H4M7	779 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	CHST7	Q9NS84	486 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	EPS15L1	Q9UBC2	864 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	TBX20	Q9UMR3	447 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	SPTBN4	Q9H254	2564 aa		13.76	□□□□□ -0.21
UPF1-208	ENST00000600012	CFAP54	Q96N23	3096 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	KCNJ18	B7U540	433 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	TISP43	B9A030	160 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012		F8W810	466 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	PDXK	O00764	312 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	CLIC2	O15247	247 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	CALU	O43852	315 aa	Predicted RBP	13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	RFPL2	O75678	378 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	ADCY5	O95622	1261 aa		13.75	□□□□□ -0.21
UPF1-208	ENST00000600012	CDK11B	P21127	795 aa	Known RBP	13.75	□□□□□ -0.21

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