RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 GLYCTKQ8IVS8 523 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 LRRC43Q8N309 656 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 STRNO43815 780 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 TDP2O95551 362 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 IRF1P10914 325 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 TRMT2AQ8IZ69 625 aaKnown RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 ZNF668Q96K58 619 aaPredicted RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.5■■□□□ 1.033e-6■■■■□ 24.3
UPF1-207ENST00000599848 PKD2L2Q9NZM6 624 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 ATP11BQ9Y2G3 1177 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 ZBTB12Q9Y330 459 aaPredicted RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 FAM32AQ9Y421 112 aaKnown RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 MRFAP1Q9Y605 127 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 H0Y626 953 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 F9P00740 461 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 GNL1P36915 607 aaPredicted RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 SNCBQ16143 134 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 ANKS6Q68DC2 871 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 HERC6Q8IVU3 1022 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 HEMGNQ9BXL5 484 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 ALDH8A1Q9H2A2 487 aaPredicted RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 RAB23Q9ULC3 237 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 TGM3Q08188 693 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 TWF1Q12792 350 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 RASIP1Q5U651 963 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 CYB5R4Q7L1T6 521 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 PRUNE1Q86TP1 453 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 TMEM143Q96AN5 459 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 PABPC5Q96DU9 382 aaKnown RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 ARHGEF38Q9NXL2 777 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 C6orf203Q9P0P8 240 aaPredicted RBP21.5■■□□□ 1.03
UPF1-207ENST00000599848 DNAJC7Q99615 494 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 ARHGAP26Q9UNA1 814 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 UBE2Q2LH0YL09 131 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 EXTL3O43909 919 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 CABYRO75952 493 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 EEF1DP29692 281 aaKnown RBP21.49■■□□□ 1.03
UPF1-207ENST00000599848 EIF3EP60228 445 aaKnown RBP21.49■■□□□ 1.03
UPF1-207ENST00000599848 DHX34Q14147 1143 aaKnown RBP21.49■■□□□ 1.03
UPF1-207ENST00000599848 AGPAT1Q99943 283 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 CINPQ9BW66 212 aaPredicted RBP21.49■■□□□ 1.03
UPF1-207ENST00000599848 RASA4BC9J798 803 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 RASA4O43374 803 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 FRMD8Q9BZ67 464 aaPredicted RBP21.49■■□□□ 1.03
UPF1-207ENST00000599848 A0A1W2PQC6 194 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 SPAG6O75602 509 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 LINC00523Q86TU6 105 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 PHF21AQ96BD5 680 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 SENP7Q9BQF6 1050 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 MKNK1Q9BUB5 465 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 FOXP3Q9BZS1 431 aa21.49■■□□□ 1.03
UPF1-207ENST00000599848 PPARGC1AQ9UBK2 798 aaKnown RBP21.49■■□□□ 1.03
UPF1-207ENST00000599848 ACSL3O95573 720 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 FAM107AO95990 144 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 HMBSP08397 361 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 HSPA1AP0DMV8 641 aaKnown RBP21.48■■□□□ 1.03
UPF1-207ENST00000599848 HSPA1BP0DMV9 641 aaKnown RBP21.48■■□□□ 1.03
UPF1-207ENST00000599848 AVPR1AP37288 418 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 GPS1Q13098 491 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 EZH2Q15910 746 aaKnown RBP21.48■■□□□ 1.03
UPF1-207ENST00000599848 EPHA10Q5JZY3 1008 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 DDIASQ8IXT1 998 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 NIF3L1Q9GZT8 377 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 HEATR9A2RTY3 570 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 LZTS3O60299 673 aaPredicted RBP21.48■■□□□ 1.03
UPF1-207ENST00000599848 ZBTB17Q13105 803 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 ZSCAN26Q16670 478 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 LCA5Q86VQ0 697 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 SYCE1LA8MT33 242 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 ICAM1P05362 532 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 C2orf54Q08AI8 447 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 AP1M1Q9BXS5 423 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 PITPNM3Q9BZ71 974 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 PRG3Q9Y2Y8 225 aaPredicted RBP21.48■■□□□ 1.03
UPF1-207ENST00000599848 LRRC53A6NM62 1247 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 F5H5T6 163 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 PALMO75781 387 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 TMCO5AQ8N6Q1 288 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 LINC00116Q8NCU8 138 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 BPIFA3Q9BQP9 254 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 MTG1Q9BT17 334 aaPredicted RBP21.48■■□□□ 1.03
UPF1-207ENST00000599848 ING2Q9H160 280 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 SFMBT1Q9UHJ3 866 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 SPAG7O75391 227 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 SLCO1A2P46721 670 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 SERPINB4P48594 390 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 RABL6Q3YEC7 729 aaPredicted RBP21.48■■□□□ 1.03
UPF1-207ENST00000599848 SHCBP1Q8NEM2 672 aa21.48■■□□□ 1.03
UPF1-207ENST00000599848 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
UPF1-207ENST00000599848 ANXA9O76027 345 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 GCKP35557 465 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 NAPEPLDQ6IQ20 393 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 MFSD1Q9H3U5 465 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 CRLS1Q9UJA2 301 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 GTPBP10A4D1E9 387 aaKnown RBP21.47■■□□□ 1.03
UPF1-207ENST00000599848 NMT2O60551 498 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 NPTXRO95502 500 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 NOVA2Q9UNW9 492 aaKnown RBP21.47■■□□□ 1.03
UPF1-207ENST00000599848 MBL2P11226 248 aaPredicted RBP21.47■■□□□ 1.03
UPF1-207ENST00000599848 DPYDQ12882 1025 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms