RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 STX17P56962 302 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 MYO1EQ12965 1108 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 TPD52L1Q16890 204 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 SV2CQ496J9 727 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 TRAPPC11Q7Z392 1133 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 TMEM173Q86WV6 379 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 VPS52Q8N1B4 723 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 SUSD3Q96L08 255 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 BPIFA3Q9BQP9 254 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 HERC2P3Q9BVR0 1158 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 SRRTQ9BXP5 876 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 OXCT2Q9BYC2 517 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 MTMR12Q9C0I1 747 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 GZF1Q9H116 711 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 PMM2O15305 246 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 ITGB3P05106 788 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 TAF6P49848 677 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 LILRA4P59901 499 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 SMC1AQ14683 1233 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 ZACNQ401N2 412 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 CCDC40Q4G0X9 1142 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 TMC7Q7Z402 723 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 APPL2Q8NEU8 664 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 OR5B17Q8NGF7 314 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 CXorf38Q8TB03 319 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 GDPD5Q8WTR4 605 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 BCL7CQ8WUZ0 217 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 TAF4BQ92750 862 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 CDX2Q99626 313 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 ZBP1Q9H171 429 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 MRPL17Q9NRX2 175 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 DSEQ9UL01 958 aa17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 TDRD15B5MCY1 1934 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-219ENST00000599575 SZT2Q5T011 3432 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 M0QZQ0 153 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 FSCN2O14926 492 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 NCK2O43639 380 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 URODP06132 367 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 FAM163BP0C2L3 166 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 FGFR3P22607 806 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 GLUD2P49448 558 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 DSG1Q02413 1049 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 PTPRJQ12913 1337 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 CAMK1Q14012 370 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 KRT39Q6A163 491 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 KIAA1841Q6NSI8 718 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 CD300LGQ6UXG3 332 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 C15orf39Q6ZRI6 1047 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 MRPL43Q8N983 215 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 C3orf58Q8NDZ4 430 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 SPATA18Q8TC71 538 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 PLEKHO2Q8TD55 490 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 FAXDC2Q96IV6 333 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 MED15Q96RN5 788 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 POP1Q99575 1024 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 TCF25Q9BQ70 676 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 TTPALQ9BTX7 342 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 GPR62Q9BZJ7 368 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 VRTNQ9H8Y1 702 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 TMEM8AQ9HCN3 771 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 GDAP2Q9NXN4 497 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 AGAP1Q9UPQ3 857 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 MTCH2Q9Y6C9 303 aa17.85■□□□□ 0.45
SHKBP1-219ENST00000599575 KPNA7A9QM74 516 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 P4HA2O15460 535 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 N4BP1O75113 896 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 PHACTR2O75167 634 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 C4BPAP04003 597 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 TYMPP19971 482 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 POLR2BP30876 1174 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 MYL5Q02045 173 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 CETN1Q12798 172 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 TRPC3Q13507 836 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 ZSCAN23Q3MJ62 389 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 FAM171A1Q5VUB5 890 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 ANKS3Q6ZW76 656 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 SV2AQ7L0J3 742 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 Q7L0L9 218 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 DPH6Q7L8W6 267 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 TRIM59Q8IWR1 403 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 MICAL1Q8TDZ2 1067 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 PIK3R5Q8WYR1 880 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 ZNF516Q92618 1163 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 SLC35C1Q96A29 364 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 EEF2KMTQ96G04 330 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 FAM161BQ96MY7 647 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 GUCD1Q96NT3 240 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 CDCA3Q99618 268 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 VN1R3Q9BXE9 311 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 NSUN3Q9H649 340 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 ENTPD7Q9NQZ7 604 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 SIX4Q9UIU6 781 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 PCDHB8Q9UN66 801 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 NLRC5Q86WI3 1866 aa17.84■□□□□ 0.45
SHKBP1-219ENST00000599575 CDH23Q9H251 3354 aa17.83■□□□□ 0.45
SHKBP1-219ENST00000599575 SYCE3A1L190 88 aa17.83■□□□□ 0.44
SHKBP1-219ENST00000599575 RFXAPO00287 272 aa17.83■□□□□ 0.44
SHKBP1-219ENST00000599575 TULP1O00294 542 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms