RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 BORCS6Q96GS4 357 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 CEP63Q96MT8 703 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 ERVK-5Q9HDB9 667 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 PADI3Q9ULW8 664 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 ST3GAL5Q9UNP4 418 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 SQORQ9Y6N5 450 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 USP9XQ93008 2570 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-208ENST00000597172 GOLGA8IPA6NC78 632 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 GOLGA8JA6NMD2 632 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 GOLGA6L19H0YKK7 550 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 PER2O15055 1255 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 CLDN3O15551 220 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 ERLIN2O94905 339 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 FGFR1OPO95684 399 aaKnown RBP10.26□□□□□ -0.77
TRIM28-208ENST00000597172 ITGB1P05556 798 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 SP9P0CG40 484 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 GHRP10912 638 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 SFPQP23246 707 aaKnown RBP eCLIP10.26□□□□□ -0.77
TRIM28-208ENST00000597172 RPL13P26373 211 aaKnown RBP10.26□□□□□ -0.77
TRIM28-208ENST00000597172 AXLP30530 894 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 CD52P31358 61 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 MCCD1P59942 119 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-208ENST00000597172 TCP11X2Q5H9J9 407 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 ZBTB41Q5SVQ8 909 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 UBXN11Q5T124 520 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 SLFN12LQ6IEE8 588 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 MPZL3Q6UWV2 235 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 XXYLT1Q8NBI6 393 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 RDH13Q8NBN7 331 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 VN1R2Q8NFZ6 395 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 POMGNT1Q8WZA1 660 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 SAAL1Q96ER3 474 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 TMX1Q9H3N1 280 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 GRPEL1Q9HAV7 217 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 AGPAT5Q9NUQ2 364 aa10.26□□□□□ -0.77
TRIM28-208ENST00000597172 AGO2Q9UKV8 859 aaKnown RBP10.26□□□□□ -0.77
TRIM28-208ENST00000597172 KCNJ18B7U540 433 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 N4BP3O15049 544 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 GPR182O15218 404 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 SLC16A3O15427 465 aaKnown RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 EXTL3O43909 919 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 MGEA5O60502 916 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 EXOC3O60645 756 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 CDK11BP21127 795 aaKnown RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 PSMC2P35998 433 aaKnown RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 ACOT2P49753 483 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 MARSP56192 900 aaKnown RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 NFX1Q12986 1120 aaKnown RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 BTG3Q14201 252 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 KCNJ12Q14500 433 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 DSC3Q14574 896 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 KRT31Q15323 416 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 SEZ6Q53EL9 994 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 CEP135Q66GS9 1140 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 NOTUMQ6P988 496 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 RTN4RL1Q86UN2 441 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 CBWD2Q8IUF1 395 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 GPD1LQ8N335 351 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 PLEKHO2Q8TD55 490 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 POF1BQ8WVV4 589 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 NAP1L5Q96NT1 182 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 TCHPQ9BT92 498 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 MKNK1Q9BUB5 465 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 MSTO1Q9BUK6 570 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 APOL5Q9BWW9 433 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 EIF2AQ9BY44 585 aaKnown RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 CDT1Q9H211 546 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 ANKFY1Q9P2R3 1169 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 LIMD1Q9UGP4 676 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 LIMA1Q9UHB6 759 aaKnown RBP10.25□□□□□ -0.77
TRIM28-208ENST00000597172 USP18Q9UMW8 372 aa10.25□□□□□ -0.77
TRIM28-208ENST00000597172 STK25O00506 426 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 KIAA0391O15091 583 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 MAPK13O15264 365 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 OGTO15294 1046 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 MEFVO15553 781 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 NPTXRO95502 500 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 GNA14O95837 355 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 LDHAP00338 332 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 ADRB2P07550 413 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 SRGAP2BP0DMP2 458 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 MCF2P10911 925 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 HARSP12081 509 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 TNFSF9P41273 254 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 MATR3P43243 847 aaKnown RBP eCLIP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 WNT7BP56706 349 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 FANCCQ00597 558 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 NCBP1Q09161 790 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 NOLC1Q14978 699 aaKnown RBP eCLIP10.24□□□□□ -0.775e-7■■□□□ 14.3
TRIM28-208ENST00000597172 SNRNP35Q16560 246 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 TMEM132AQ24JP5 1023 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 ZNF568Q3ZCX4 644 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 C1orf220Q5T0J3 134 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 ANKRD54Q6NXT1 300 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 SLC27A1Q6PCB7 646 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 SYCE2Q6PIF2 218 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 CREBRFQ8IUR6 639 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 TRIM59Q8IWR1 403 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 FAM186BQ8IYM0 893 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 THNSL1Q8IYQ7 743 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms