RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 BDP1A6H8Y1 2624 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 ANO9A1A5B4 782 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 PIRO00625 290 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 TGM5O43548 720 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 TBC1D4O60343 1298 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 AARSP49588 968 aaKnown RBP eCLIP12.09□□□□□ -0.47
VRK3-210ENST00000596121 CYP2J2P51589 502 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 PSMD2Q13200 908 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 SMAD4Q13485 552 aaKnown RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 BMS1Q14692 1282 aaKnown RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 PSMD5Q16401 504 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 LMBRD2Q68DH5 695 aaPredicted RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 SMYD4Q8IYR2 804 aaPredicted RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 PLEKHO2Q8TD55 490 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 NOC3LQ8WTT2 800 aaKnown RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 SUSD6Q92537 303 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 CASP10Q92851 521 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 BORCS6Q96GS4 357 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 DMAC2Q9NW81 257 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 DPP3Q9NY33 737 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 RBAKQ9NYW8 714 aaPredicted RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 MAPK8IP1Q9UQF2 711 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 C2CD2Q9Y426 696 aa12.09□□□□□ -0.47
VRK3-210ENST00000596121 USP15Q9Y4E8 981 aaPredicted RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 TIMM13Q9Y5L4 95 aaPredicted RBP12.09□□□□□ -0.47
VRK3-210ENST00000596121 PLXNA3P51805 1871 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 M0QZQ0 153 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 DLL1O00548 723 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 IL18RAPO95256 599 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 LDHAP00338 332 aaKnown RBP12.08□□□□□ -0.48
VRK3-210ENST00000596121 LILRA4P59901 499 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 ELAVL2Q12926 359 aaKnown RBP12.08□□□□□ -0.48
VRK3-210ENST00000596121 MRPL58Q14197 206 aaKnown RBP12.08□□□□□ -0.48
VRK3-210ENST00000596121 KCNB1Q14721 858 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 SMAD2Q15796 467 aaKnown RBP12.08□□□□□ -0.48
VRK3-210ENST00000596121 VARS2Q5ST30 1063 aaKnown RBP12.08□□□□□ -0.48
VRK3-210ENST00000596121 RARS2Q5T160 578 aaKnown RBP12.08□□□□□ -0.48
VRK3-210ENST00000596121 C12orf56Q8IXR9 622 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 C1orf127Q8N9H9 656 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 RDH13Q8NBN7 331 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 BEST2Q8NFU1 509 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 OR5B17Q8NGF7 314 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 SPATA20Q8TB22 786 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 SUSD3Q96L08 255 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 TIGD1Q96MW7 591 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 TSPAN18Q96SJ8 248 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 POP1Q99575 1024 aaKnown RBP12.08□□□□□ -0.48
VRK3-210ENST00000596121 MTRRQ9UBK8 725 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 SSX2IPQ9Y2D8 614 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 PCDHA5Q9Y5H7 936 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 SCN1AP35498 2009 aa12.08□□□□□ -0.48
VRK3-210ENST00000596121 ZNF233A6NK53 670 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 TULP1O00294 542 aaPredicted RBP12.07□□□□□ -0.48
VRK3-210ENST00000596121 RFPL2O75678 378 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 ADH1AP07327 375 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 MCM4P33991 863 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 OR1D2P34982 312 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 CASP4P49662 377 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 SNRPFP62306 86 aaKnown RBP12.07□□□□□ -0.48
VRK3-210ENST00000596121 SNRNP35Q16560 246 aaKnown RBP12.07□□□□□ -0.48
VRK3-210ENST00000596121 PUS10Q3MIT2 529 aaKnown RBP12.07□□□□□ -0.48
VRK3-210ENST00000596121 TMC5Q6UXY8 1006 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 PPFIBP1Q86W92 1011 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 XXYLT1Q8NBI6 393 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 ZNF516Q92618 1163 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 UHRF1Q96T88 793 aaPredicted RBP12.07□□□□□ -0.48
VRK3-210ENST00000596121 ADAM7Q9H2U9 754 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 MAN1C1Q9NR34 630 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.07□□□□□ -0.48
VRK3-210ENST00000596121 SIX4Q9UIU6 781 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 PCDHB8Q9UN66 801 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 NUB1Q9Y5A7 615 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 BACE2Q9Y5Z0 518 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 CDY1Q9Y6F8 540 aa12.07□□□□□ -0.48
VRK3-210ENST00000596121 FSD2A1L4K1 749 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 C19orf67A6NJJ6 358 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 SYN3O14994 580 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 KIAA0391O15091 583 aaKnown RBP12.06□□□□□ -0.48
VRK3-210ENST00000596121 TRAPPC3O43617 180 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 PRPF40AO75400 957 aaKnown RBP12.06□□□□□ -0.48
VRK3-210ENST00000596121 GLUD1P00367 558 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 HOXB8P17481 243 aaPredicted RBP12.06□□□□□ -0.48
VRK3-210ENST00000596121 TFAMQ00059 246 aaKnown RBP12.06□□□□□ -0.48
VRK3-210ENST00000596121 ZP2Q05996 745 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 CYP24A1Q07973 514 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 RAB33AQ14088 237 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 HS2ST1Q7LGA3 356 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 KREMEN2Q8NCW0 462 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 TMEM174Q8WUU8 243 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 KHSRPQ92945 711 aaKnown RBP eCLIP12.06□□□□□ -0.48
VRK3-210ENST00000596121 ZNF707Q96C28 371 aaPredicted RBP12.06□□□□□ -0.48
VRK3-210ENST00000596121 SENP8Q96LD8 212 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 MFSD14AQ96MC6 490 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 IPO9Q96P70 1041 aaKnown RBP12.06□□□□□ -0.48
VRK3-210ENST00000596121 MTMR12Q9C0I1 747 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 INTS13Q9NVM9 706 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 FBXL5Q9UKA1 691 aa12.06□□□□□ -0.48
VRK3-210ENST00000596121 PDXKO00764 312 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 XPOTO43592 962 aaKnown RBP12.05□□□□□ -0.48
VRK3-210ENST00000596121 OAZ2O95190 189 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms