RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 RPL17P18621 184 aaKnown RBP15.77■□□□□ 0.12
VRK3-206ENST00000594090 CYP2J2P51589 502 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 PDXDC1Q6P996 788 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 SYCE2Q6PIF2 218 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 CBWD2Q8IUF1 395 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 GOLGA5Q8TBA6 731 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 SUSD3Q96L08 255 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 IPO9Q96P70 1041 aaKnown RBP15.77■□□□□ 0.12
VRK3-206ENST00000594090 KCTD10Q9H3F6 313 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 TSHZ2Q9NRE2 1034 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 DZANK1Q9NVP4 752 aa15.77■□□□□ 0.12
VRK3-206ENST00000594090 HOOK1Q9UJC3 728 aaKnown RBP15.77■□□□□ 0.12
VRK3-206ENST00000594090 TCF20Q9UGU0 1960 aaKnown RBP15.77■□□□□ 0.11
VRK3-206ENST00000594090 ANO9A1A5B4 782 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 ZNF233A6NK53 670 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 SYN3O14994 580 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 KINO60870 393 aaKnown RBP15.77■□□□□ 0.11
VRK3-206ENST00000594090 KIF20AO95235 890 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 GLUD1P00367 558 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 AARSP49588 968 aaKnown RBP eCLIP15.77■□□□□ 0.11
VRK3-206ENST00000594090 UBE2HP62256 183 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 SNRNP35Q16560 246 aaKnown RBP15.77■□□□□ 0.11
VRK3-206ENST00000594090 C9orf57Q5W0N0 161 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 GLYCTKQ8IVS8 523 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 XXYLT1Q8NBI6 393 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 ADAMTS19Q8TE59 1207 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 PDE11AQ9HCR9 933 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 DPP3Q9NY33 737 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 MTRRQ9UBK8 725 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 FAM50BQ9Y247 325 aa15.77■□□□□ 0.11
VRK3-206ENST00000594090 TSC2P49815 1807 aa15.76■□□□□ 0.11
VRK3-206ENST00000594090 TULP1O00294 542 aaPredicted RBP15.76■□□□□ 0.11
VRK3-206ENST00000594090 PIRO00625 290 aa15.76■□□□□ 0.11
VRK3-206ENST00000594090 TFAMQ00059 246 aaKnown RBP15.76■□□□□ 0.11
VRK3-206ENST00000594090 ANKS3Q6ZW76 656 aa15.76■□□□□ 0.11
VRK3-206ENST00000594090 ELOA2Q8IYF1 753 aaPredicted RBP15.76■□□□□ 0.11
VRK3-206ENST00000594090 ERCC4Q92889 916 aaPredicted RBP15.76■□□□□ 0.11
VRK3-206ENST00000594090 APOL5Q9BWW9 433 aa15.76■□□□□ 0.11
VRK3-206ENST00000594090 COL25A1Q9BXS0 654 aaPredicted RBP15.76■□□□□ 0.11
VRK3-206ENST00000594090 RMND1Q9NWS8 449 aa15.76■□□□□ 0.11
VRK3-206ENST00000594090 PCDHB8Q9UN66 801 aa15.76■□□□□ 0.11
VRK3-206ENST00000594090 PCDHA5Q9Y5H7 936 aa15.76■□□□□ 0.11
VRK3-206ENST00000594090 M0QZQ0 153 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 PDXKO00764 312 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 ADAM12O43184 909 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 SMC2O95347 1197 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 C1RP00736 705 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 LILRA4P59901 499 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 SURF1Q15526 300 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 SMAD2Q15796 467 aaKnown RBP15.75■□□□□ 0.11
VRK3-206ENST00000594090 VARS2Q5ST30 1063 aaKnown RBP15.75■□□□□ 0.11
VRK3-206ENST00000594090 PALB2Q86YC2 1186 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 GUF1Q8N442 669 aaKnown RBP15.75■□□□□ 0.11
VRK3-206ENST00000594090 RDH13Q8NBN7 331 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 SPATA20Q8TB22 786 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 CACTINQ8WUQ7 758 aaKnown RBP15.75■□□□□ 0.11
VRK3-206ENST00000594090 TMEM174Q8WUU8 243 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 SMARCE1Q969G3 411 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 FAM84AQ96KN4 292 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 NECAB3Q96P71 396 aaPredicted RBP15.75■□□□□ 0.11
VRK3-206ENST00000594090 GSDMAQ96QA5 445 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 CLSTN3Q9BQT9 956 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 S1PR5Q9H228 398 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 SFXN1Q9H9B4 322 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 MAN1C1Q9NR34 630 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 MAPK8IP1Q9UQF2 711 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 USP15Q9Y4E8 981 aaPredicted RBP15.75■□□□□ 0.11
VRK3-206ENST00000594090 BACE2Q9Y5Z0 518 aa15.75■□□□□ 0.11
VRK3-206ENST00000594090 PTPRJQ12913 1337 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 SPTLC1O15269 473 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 TGM5O43548 720 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 EXOC3O60645 756 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 TMEM191BP0C7N4 346 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 PAX3P23760 479 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 CYP24A1Q07973 514 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 PSMD6Q15008 389 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 RARS2Q5T160 578 aaKnown RBP15.74■□□□□ 0.11
VRK3-206ENST00000594090 RSPO2Q6UXX9 243 aaPredicted RBP15.74■□□□□ 0.11
VRK3-206ENST00000594090 CLEC17AQ6ZS10 378 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 SLC9A9Q8IVB4 645 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 SMYD4Q8IYR2 804 aaPredicted RBP15.74■□□□□ 0.11
VRK3-206ENST00000594090 C1orf127Q8N9H9 656 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 APPL2Q8NEU8 664 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 SUSD6Q92537 303 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 UHRF1Q96T88 793 aaPredicted RBP15.74■□□□□ 0.11
VRK3-206ENST00000594090 MTMR12Q9C0I1 747 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 DMAC2Q9NW81 257 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 TRAF3IP3Q9Y228 551 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 A0A0C4DFX4 3053 aa15.74■□□□□ 0.11
VRK3-206ENST00000594090 SCN1AP35498 2009 aa15.73■□□□□ 0.11
VRK3-206ENST00000594090 SPDYE4A6NLX3 237 aa15.73■□□□□ 0.11
VRK3-206ENST00000594090 CALUO43852 315 aaPredicted RBP15.73■□□□□ 0.11
VRK3-206ENST00000594090 PRPF40AO75400 957 aaKnown RBP15.73■□□□□ 0.11
VRK3-206ENST00000594090 NR3C1P04150 777 aa15.73■□□□□ 0.11
VRK3-206ENST00000594090 ITGB3P05106 788 aa15.73■□□□□ 0.11
VRK3-206ENST00000594090 POLR2BP30876 1174 aaKnown RBP15.73■□□□□ 0.11
VRK3-206ENST00000594090 TAF6P49848 677 aa15.73■□□□□ 0.11
VRK3-206ENST00000594090 ITIH3Q06033 890 aa15.73■□□□□ 0.11
VRK3-206ENST00000594090 RAB33AQ14088 237 aa15.73■□□□□ 0.11
VRK3-206ENST00000594090 MRPL58Q14197 206 aaKnown RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms