RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 LMBR1Q8WVP7 490 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 EDAQ92838 391 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 CCDC47Q96A33 483 aaKnown RBP11.31□□□□□ -0.6
SS18-221ENST00000582448 CCSER1Q9C0I3 900 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 LRRC27Q9C0I9 530 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 CBX8Q9HC52 389 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 RMND1Q9NWS8 449 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 TUBE1Q9UJT0 475 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 RWDD3Q9Y3V2 267 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 ADGRA3Q8IWK6 1321 aa11.31□□□□□ -0.6
SS18-221ENST00000582448 TMEM221A6NGB7 291 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 M0R296 226 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 BIN1O00499 593 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 TBX3O15119 743 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 SLC26A4O43511 780 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 HOXC8P31273 242 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 SREBF1P36956 1147 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 TECP42680 631 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 ARL4DP49703 201 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 IGBP1P78318 339 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 MRPS9P82933 396 aaKnown RBP11.3□□□□□ -0.6
SS18-221ENST00000582448 AMPD3Q01432 767 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 ADAM15Q13444 863 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 TMC7Q7Z402 723 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 ADGRD2Q7Z7M1 963 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 RSPH3Q86UC2 560 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 SUGP1Q8IWZ8 645 aaKnown RBP11.3□□□□□ -0.6
SS18-221ENST00000582448 Q8N3U1 123 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 ERMNQ8TAM6 284 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 DNAJB3Q8WWF6 145 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 PPP2R3CQ969Q6 453 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 BPIFA3Q9BQP9 254 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 GTPBP4Q9BZE4 634 aaKnown RBP11.3□□□□□ -0.6
SS18-221ENST00000582448 TMEM60Q9H2L4 133 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 DISC1Q9NRI5 854 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 PCDHA12Q9UN75 941 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 PLAGL2Q9UPG8 496 aa11.3□□□□□ -0.6
SS18-221ENST00000582448 BAZ2BQ9UIF8 2168 aaKnown RBP11.29□□□□□ -0.6
SS18-221ENST00000582448 CYP3A7-CYP3A51PA0A087WV96 503 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 PTMAP06454 111 aaKnown RBP11.29□□□□□ -0.6
SS18-221ENST00000582448 CYP3A7P24462 503 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 DNAJB1P25685 340 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 ICAM3P32942 547 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 AFMP43652 599 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 NRIP1P48552 1158 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 GHRHRQ02643 423 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 LPIN1Q14693 890 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 IL17AQ16552 155 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 Q4G0T1 1027 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 CT47A1Q5JQC4 288 aaPredicted RBP11.29□□□□□ -0.6
SS18-221ENST00000582448 USP49Q70CQ1 688 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 IGSF22Q8N9C0 903 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 MLKLQ8NB16 471 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 MICAL1Q8TDZ2 1067 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 POF1BQ8WVV4 589 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 CCDC74AQ96AQ1 378 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 ALKBH8Q96BT7 664 aaKnown RBP11.29□□□□□ -0.6
SS18-221ENST00000582448 PAGE5Q96GU1 130 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 FAM46AQ96IP4 442 aaKnown RBP11.29□□□□□ -0.6
SS18-221ENST00000582448 RPGRIP1Q96KN7 1286 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 SNX27Q96L92 541 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 FAM20AQ96MK3 541 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 GSDMAQ96QA5 445 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 MTMR9Q96QG7 549 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 TTC12Q9H892 705 aaPredicted RBP11.29□□□□□ -0.6
SS18-221ENST00000582448 FAM86C1Q9NVL1 165 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 PCDHA5Q9Y5H7 936 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 CDY2AQ9Y6F7 541 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 MRPL42Q9Y6G3 142 aaKnown RBP11.29□□□□□ -0.6
SS18-221ENST00000582448 NRCAMQ92823 1304 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 KDM3AQ9Y4C1 1321 aa11.29□□□□□ -0.6
SS18-221ENST00000582448 SLC37A4O43826 429 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 DGKIO75912 1065 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 CYP3A4P08684 503 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 LINC00271P0C7V0 271 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 CD52P31358 61 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 TCF7P36402 384 aaPredicted RBP11.28□□□□□ -0.6
SS18-221ENST00000582448 ADAM17P78536 824 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 ZXDAP98168 799 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 MGAT3Q09327 533 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 PPFIA1Q13136 1202 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 CAMK1Q14012 370 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 KARSQ15046 597 aaKnown RBP11.28□□□□□ -0.6
SS18-221ENST00000582448 ZNF423Q2M1K9 1284 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 PRR16Q569H4 304 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 SPOUT1Q5T280 376 aaKnown RBP11.28□□□□□ -0.6
SS18-221ENST00000582448 NT5DC1Q5TFE4 455 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 HAUS3Q68CZ6 603 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 NLRX1Q86UT6 975 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 LUZP1Q86V48 1076 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 SPPL3Q8TCT6 385 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 ERCC4Q92889 916 aaPredicted RBP11.28□□□□□ -0.6
SS18-221ENST00000582448 GLG1Q92896 1179 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 ZNF689Q96CS4 500 aaPredicted RBP11.28□□□□□ -0.6
SS18-221ENST00000582448 ZBTB10Q96DT7 871 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 DMRTB1Q96MA1 342 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 PPP1R9BQ96SB3 815 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 RUSC1Q9BVN2 902 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 NT5C3AQ9H0P0 336 aa11.28□□□□□ -0.6
SS18-221ENST00000582448 FAM49AQ9H0Q0 323 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms