RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CALCAP01258 141 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 KRT19P08727 400 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 H2AFZP0C0S5 128 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 ACO1P21399 889 aaKnown RBP11.29□□□□□ -0.6
SS18-217ENST00000580958 TBXAS1P24557 533 aaPredicted RBP11.29□□□□□ -0.6
SS18-217ENST00000580958 GUCY2FP51841 1108 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 ACLYP53396 1101 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 MGAT3Q09327 533 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 ITGA7Q13683 1181 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 TMEM132DQ14C87 1099 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 PTGISQ16647 500 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 SGSM1Q2NKQ1 1148 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 ZNF699Q32M78 642 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 UBXN11Q5T124 520 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 H2AFVQ71UI9 128 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 SLC47A2Q86VL8 602 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 PALB2Q86YC2 1186 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 UBR7Q8N806 425 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 MYRIPQ8NFW9 859 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 EPS8L1Q8TE68 723 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 NAPGQ99747 312 aaPredicted RBP11.29□□□□□ -0.6
SS18-217ENST00000580958 APOL6Q9BWW8 343 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 IMPG2Q9BZV3 1241 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 SENP6Q9GZR1 1112 aaPredicted RBP11.29□□□□□ -0.6
SS18-217ENST00000580958 ASB7Q9H672 318 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 ACP6Q9NPH0 428 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 SIX4Q9UIU6 781 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 NOCTQ9UK39 431 aaKnown RBP11.29□□□□□ -0.6
SS18-217ENST00000580958 PCDHB4Q9Y5E5 795 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 ATP8B3O60423 1300 aa11.29□□□□□ -0.6
SS18-217ENST00000580958 FAM170AA1A519 330 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 CTAGE9A4FU28 777 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 TMCO5BA8MYB1 307 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 TACC1O75410 805 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 RPS6KA5O75582 802 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 RECQL4O94761 1208 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 CHRNA1P02708 482 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 ITGB3P05106 788 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 CYP11B1P15538 503 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 PDE6CP51160 858 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 FMO1Q01740 532 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 PTPN11Q06124 597 aaPredicted RBP11.28□□□□□ -0.6
SS18-217ENST00000580958 SCARA5Q6ZMJ2 495 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 RPAINQ86UA6 219 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 NT5DC4Q86YG4 428 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 CD302Q8IX05 232 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 C1orf127Q8N9H9 656 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 SH3TC2Q8TF17 1288 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 SNX27Q96L92 541 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 PCDHB18PQ96TA0 734 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 TSEN34Q9BSV6 310 aaKnown RBP11.28□□□□□ -0.6
SS18-217ENST00000580958 TRIM6Q9C030 488 aaPredicted RBP11.28□□□□□ -0.6
SS18-217ENST00000580958 NIF3L1Q9GZT8 377 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.28□□□□□ -0.6
SS18-217ENST00000580958 XYLT2Q9H1B5 865 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 CXCL16Q9H2A7 254 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 NXF3Q9H4D5 531 aaKnown RBP11.28□□□□□ -0.6
SS18-217ENST00000580958 TAS2R14Q9NYV8 317 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 SALL4Q9UJQ4 1053 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 POLIQ9UNA4 740 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 HES2Q9Y543 173 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 CAPN6Q9Y6Q1 641 aa11.28□□□□□ -0.6
SS18-217ENST00000580958 UQCRHLA0A096LP55 91 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 MOXD2PA6NHM9 499 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 BUB1O43683 1085 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 RPLP2P05387 115 aaKnown RBP11.27□□□□□ -0.61
SS18-217ENST00000580958 UQCRHP07919 91 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 MMEP08473 750 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 POLR2BP30876 1174 aaKnown RBP11.27□□□□□ -0.61
SS18-217ENST00000580958 THPOP40225 353 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 TERF1P54274 439 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 YARSP54577 528 aaKnown RBP11.27□□□□□ -0.61
SS18-217ENST00000580958 GALCP54803 685 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 NAP1L1P55209 391 aaKnown RBP11.27□□□□□ -0.61
SS18-217ENST00000580958 PTK7Q13308 1070 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 RNF10Q8N5U6 811 aaKnown RBP11.27□□□□□ -0.61
SS18-217ENST00000580958 RBBP8NLQ8NC74 664 aaPredicted RBP11.27□□□□□ -0.61
SS18-217ENST00000580958 CXorf38Q8TB03 319 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 TAF4BQ92750 862 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 GLT1D1Q96MS3 346 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 NOX5Q96PH1 765 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 BEGAINQ9BUH8 593 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 UNC93B1Q9H1C4 597 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 L2HGDHQ9H9P8 463 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 PLEKHA5Q9HAU0 1116 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 TRMT13Q9NUP7 481 aaKnown RBP11.27□□□□□ -0.61
SS18-217ENST00000580958 DPP3Q9NY33 737 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 INTUQ9ULD6 942 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 ST3GAL5Q9UNP4 418 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 AGAP1Q9UPQ3 857 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 NOD1Q9Y239 953 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 C2CD2Q9Y426 696 aa11.27□□□□□ -0.61
SS18-217ENST00000580958 A0A1W2PQ45 241 aaPredicted RBP11.26□□□□□ -0.61
SS18-217ENST00000580958 A0A1W2PQY0 241 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 BTNL10A8MVZ5 291 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 STK25O00506 426 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 CD58P19256 250 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 AKAP5P24588 427 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 ASPAP45381 313 aa11.26□□□□□ -0.61
SS18-217ENST00000580958 RAP1GAPP47736 663 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms