RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 SF3B1O75533 1304 aaKnown RBP eCLIP16.75■□□□□ 0.275e-6■■■■■ 82.8
SS18-216ENST00000580751 EPOPA6NHQ4 379 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 TADA2AO75478 443 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 B3GAT3O94766 335 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 KIF4AO95239 1232 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 TPM2P07951 284 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 ELAVL2Q12926 359 aaKnown RBP16.75■□□□□ 0.27
SS18-216ENST00000580751 BFSP1Q12934 665 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 PTPROQ16827 1216 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 FILIP1LQ4L180 1135 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 TCP11X2Q5H9J9 407 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 Q7L0L9 218 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 DDX53Q86TM3 631 aaKnown RBP16.75■□□□□ 0.27
SS18-216ENST00000580751 SPPL3Q8TCT6 385 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 PARD3BQ8TEW8 1205 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 BCL7CQ8WUZ0 217 aaPredicted RBP16.75■□□□□ 0.27
SS18-216ENST00000580751 EEF2KMTQ96G04 330 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 MTMR12Q9C0I1 747 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 METTL14Q9HCE5 456 aaKnown RBP16.75■□□□□ 0.27
SS18-216ENST00000580751 ALG13Q9NP73 1137 aaKnown RBP16.75■□□□□ 0.27
SS18-216ENST00000580751 SAMSN1Q9NSI8 373 aaKnown RBP16.75■□□□□ 0.27
SS18-216ENST00000580751 CACNG4Q9UBN1 327 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 ITGA11Q9UKX5 1188 aa16.75■□□□□ 0.27
SS18-216ENST00000580751 PTPRJQ12913 1337 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 GRM6O15303 877 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 TRAPPC3O43617 180 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 PAX3P23760 479 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 VAMP7P51809 220 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 GUCY2FP51841 1108 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 CLDN10P78369 228 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 FANCCQ00597 558 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 C9orf57Q5W0N0 161 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 FUT10Q6P4F1 479 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 FRMD5Q7Z6J6 570 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 POF1BQ8WVV4 589 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 RABGGTAQ92696 567 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 MRFAP1L1Q96HT8 127 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 GAS2L1Q99501 681 aaPredicted RBP16.74■□□□□ 0.27
SS18-216ENST00000580751 ARMCX3Q9UH62 379 aaPredicted RBP16.74■□□□□ 0.27
SS18-216ENST00000580751 R3HCC1Q9Y3T6 440 aaKnown RBP16.74■□□□□ 0.27
SS18-216ENST00000580751 NUB1Q9Y5A7 615 aa16.74■□□□□ 0.27
SS18-216ENST00000580751 PLXNA4Q9HCM2 1894 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 LRRIQ3A6PVS8 624 aaPredicted RBP16.73■□□□□ 0.27
SS18-216ENST00000580751 KCNJ18B7U540 433 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 F8W810 466 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 RFXAPO00287 272 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 LPXNO60711 386 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 SERPINC1P01008 464 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 PNPLA4P41247 253 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 MCCD1P59942 119 aaPredicted RBP16.73■□□□□ 0.27
SS18-216ENST00000580751 KCNJ12Q14500 433 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 BMS1Q14692 1282 aaKnown RBP16.73■□□□□ 0.27
SS18-216ENST00000580751 CCDC40Q4G0X9 1142 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 LMBRD2Q68DH5 695 aaPredicted RBP16.73■□□□□ 0.27
SS18-216ENST00000580751 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.73■□□□□ 0.27
SS18-216ENST00000580751 IRF2BP1Q8IU81 584 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 C1orf127Q8N9H9 656 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 C3orf58Q8NDZ4 430 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 OR5B17Q8NGF7 314 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 PLEKHO2Q8TD55 490 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 HASPINQ8TF76 798 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 ZNF560Q96MR9 790 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 POP1Q99575 1024 aaKnown RBP16.73■□□□□ 0.27
SS18-216ENST00000580751 TLR9Q9NR96 1032 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 LMCD1Q9NZU5 365 aa16.73■□□□□ 0.27
SS18-216ENST00000580751 ANO9A1A5B4 782 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 PIRO00625 290 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 STX10O60499 249 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 EFEMP2O95967 443 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 SOD2P04179 222 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 ITGB3P05106 788 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 CDC25BP30305 580 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 POLR2BP30876 1174 aaKnown RBP16.72■□□□□ 0.27
SS18-216ENST00000580751 RBP5P82980 135 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 PDE12Q6L8Q7 609 aaKnown RBP16.72■□□□□ 0.27
SS18-216ENST00000580751 RNF168Q8IYW5 571 aaPredicted RBP16.72■□□□□ 0.27
SS18-216ENST00000580751 VPS52Q8N1B4 723 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 LRRC52Q8N7C0 313 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 MRPL38Q96DV4 380 aaKnown RBP16.72■□□□□ 0.27
SS18-216ENST00000580751 BORCS6Q96GS4 357 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 HERC2P3Q9BVR0 1158 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 TRIM5Q9C035 493 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 MTMR10Q9NXD2 777 aa16.72■□□□□ 0.27
SS18-216ENST00000580751 A0A1B0GTH6 734 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 URODP06132 367 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 KRT19P08727 400 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 ATP1A3P13637 1013 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 POU3F3P20264 500 aaPredicted RBP16.71■□□□□ 0.27
SS18-216ENST00000580751 DNAJB1P25685 340 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 GTF2H1P32780 548 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 TAF6P49848 677 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 UBASH3AP57075 661 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 DLG4P78352 724 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 BIRC3Q13489 604 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 USP41Q3LFD5 358 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 TIGD5Q53EQ6 642 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 DCAF17Q5H9S7 520 aaPredicted RBP16.71■□□□□ 0.27
SS18-216ENST00000580751 TRAPPC11Q7Z392 1133 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 CNOT6LQ96LI5 555 aaKnown RBP16.71■□□□□ 0.27
SS18-216ENST00000580751 GUCD1Q96NT3 240 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms