RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 FASNP49327 2511 aaKnown RBP14.94□□□□□ -0.02
CCDC40-216ENST00000576241 VPS37CA5D8V6 355 aaPredicted RBP14.93□□□□□ -0.02
CCDC40-216ENST00000576241 HNRNPDLO14979 420 aaKnown RBP14.93□□□□□ -0.02
CCDC40-216ENST00000576241 FAM13AO94988 1023 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 CLTAP09496 248 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 MCM4P33991 863 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 LIG4P49917 911 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 NCKAP1LP55160 1127 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 ARPP19P56211 112 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 ROR1Q01973 937 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 DHX8Q14562 1220 aaKnown RBP14.93□□□□□ -0.02
CCDC40-216ENST00000576241 KYAT1Q16773 422 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 SLC10A6Q3KNW5 377 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 ARSHQ5FYA8 562 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 MYCT1Q8N699 235 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 APPL2Q8NEU8 664 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 ZNF461Q8TAF7 563 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 REEP2Q9BRK0 252 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 PLEKHA5Q9HAU0 1116 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 KCNH3Q9ULD8 1083 aa14.93□□□□□ -0.02
CCDC40-216ENST00000576241 KRBA1A5PL33 1030 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 K7ENM7 598 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 TBCAO75347 108 aaKnown RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 LRG1P02750 347 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 CXCL8P10145 99 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 HOXB3P14651 431 aaPredicted RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 PLCG1P19174 1290 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 PDCP20941 246 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 ACAP1Q15027 740 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 SF3A1Q15459 793 aaKnown RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 CTXN3Q4LDR2 81 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 ZNF280DQ6N043 979 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 PARM1Q6UWI2 310 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 ST13P5Q8NFI4 369 aaPredicted RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 ITFG1Q8TB96 612 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 FGF14Q92915 247 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 SUSD3Q96L08 255 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 ZHX3Q9H4I2 956 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 TBC1D17Q9HA65 648 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 PARVGQ9HBI0 331 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 ARHGEF3Q9NR81 526 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 SLC2A4RGQ9NR83 387 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 HCFC1R1Q9NWW0 138 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 DNMT3BQ9UBC3 853 aaKnown RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 TUBGCP4Q9UGJ1 667 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 CDV3Q9UKY7 258 aaKnown RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 MRPS23Q9Y3D9 190 aaKnown RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 CACNA1IQ9P0X4 2223 aa14.92□□□□□ -0.02
CCDC40-216ENST00000576241 MTCL1Q9Y4B5 1905 aaKnown RBP14.92□□□□□ -0.02
CCDC40-216ENST00000576241 MEFVO15553 781 aaPredicted RBP14.91□□□□□ -0.02
CCDC40-216ENST00000576241 XPOTO43592 962 aaKnown RBP14.91□□□□□ -0.02
CCDC40-216ENST00000576241 ATF2P15336 505 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 MARCKSP29966 332 aaPredicted RBP14.91□□□□□ -0.02
CCDC40-216ENST00000576241 ABCD1P33897 745 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 PPP2R3AQ06190 1150 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 MCM6Q14566 821 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 KARSQ15046 597 aaKnown RBP14.91□□□□□ -0.02
CCDC40-216ENST00000576241 SPECC1Q5M775 1068 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 TPGS2Q68CL5 300 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 NPAS3Q8IXF0 933 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 RAD54LQ92698 747 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 KCNN1Q92952 543 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 COL26A1Q96A83 441 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 KIF12Q96FN5 646 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 CYP4F11Q9HBI6 524 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 BLOC1S4Q9NUP1 217 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 NCDNQ9UBB6 729 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 FBXL5Q9UKA1 691 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 TBX20Q9UMR3 447 aa14.91□□□□□ -0.02
CCDC40-216ENST00000576241 VWA8A3KMH1 1905 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 TTC26A0AVF1 554 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 ARHGEF37A1IGU5 675 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 WDR27A2RRH5 827 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 TRAK2O60296 914 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 TBC1D4O60343 1298 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 ABLIM3O94929 683 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 RHOP08100 348 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 ZNF131P52739 623 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 SPAG1Q07617 926 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 MRPL58Q14197 206 aaKnown RBP14.9□□□□□ -0.02
CCDC40-216ENST00000576241 PHLDB3Q6NSJ2 640 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 TCEAL8Q8IYN2 117 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 ELMOD1Q8N336 334 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 ING5Q8WYH8 240 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 LARP4BQ92615 738 aaKnown RBP14.9□□□□□ -0.02
CCDC40-216ENST00000576241 DDX12PQ92771 950 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 SHDQ96IW2 340 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 RTKNQ9BST9 563 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 HAPLN2Q9GZV7 340 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 RPF1Q9H9Y2 349 aaKnown RBP14.9□□□□□ -0.02
CCDC40-216ENST00000576241 UBQLN1Q9UMX0 589 aaKnown RBP14.9□□□□□ -0.02
CCDC40-216ENST00000576241 PCDHB8Q9UN66 801 aa14.9□□□□□ -0.02
CCDC40-216ENST00000576241 PRR5-ARHGAP8B1AHC4 643 aa14.89□□□□□ -0.03
CCDC40-216ENST00000576241 OGTO15294 1046 aa14.89□□□□□ -0.03
CCDC40-216ENST00000576241 KINO60870 393 aaKnown RBP14.89□□□□□ -0.03
CCDC40-216ENST00000576241 PIGRP01833 764 aa14.89□□□□□ -0.03
CCDC40-216ENST00000576241 DCNP07585 359 aaKnown RBP14.89□□□□□ -0.03
CCDC40-216ENST00000576241 CPB1P15086 417 aa14.89□□□□□ -0.03
CCDC40-216ENST00000576241 PTPN2P17706 415 aa14.89□□□□□ -0.03
CCDC40-216ENST00000576241 CYP3A5P20815 502 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms