RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SEMA4AQ9H3S1 761 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 GPBP1L1Q9HC44 474 aaPredicted RBP10.75□□□□□ -0.69
VPS53-220ENST00000576149 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS53-220ENST00000576149 NUB1Q9Y5A7 615 aa10.75□□□□□ -0.69
VPS53-220ENST00000576149 CAND2O75155 1236 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 TGFB3P10600 412 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 MAGEA9P43362 315 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 SEC24CP53992 1094 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 BYSLQ13895 437 aaKnown RBP10.74□□□□□ -0.69
VPS53-220ENST00000576149 SLC29A2Q14542 456 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 SLMAPQ14BN4 828 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 C2CD6Q53TS8 623 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 LIN9Q5TKA1 542 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 RBBP8NLQ8NC74 664 aaPredicted RBP10.74□□□□□ -0.69
VPS53-220ENST00000576149 ZNF473Q8WTR7 871 aaKnown RBP10.74□□□□□ -0.69
VPS53-220ENST00000576149 PGM2Q96G03 612 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 PAGR1Q9BTK6 254 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 SPATC1LQ9H0A9 340 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 FAM107AO95990 144 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 PAEPP09466 180 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 RARGP13631 454 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 TMOD1P28289 359 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 TCF7P36402 384 aaPredicted RBP10.74□□□□□ -0.69
VPS53-220ENST00000576149 DRP2Q13474 957 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 NCOA4Q13772 614 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 LLGL1Q15334 1064 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 PPP1R7Q15435 360 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 SEZ6Q53EL9 994 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 PLEKHA7Q6IQ23 1121 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 METTL7BQ6UX53 244 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 SPATS2Q86XZ4 545 aaKnown RBP10.74□□□□□ -0.69
VPS53-220ENST00000576149 PHF13Q86YI8 300 aaPredicted RBP10.74□□□□□ -0.69
VPS53-220ENST00000576149 PASD1Q8IV76 773 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 SEPT1Q8WYJ6 367 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 C11orf70Q9BRQ4 267 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 MRPL47Q9HD33 250 aaKnown RBP10.74□□□□□ -0.69
VPS53-220ENST00000576149 ADAM22Q9P0K1 906 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 UMODL1Q5DID0 1318 aa10.74□□□□□ -0.69
VPS53-220ENST00000576149 A0A0G2JMZ2 1700 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 TTLL13PA6NNM8 815 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 E7EVH7 732 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 TP73O15350 636 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 FAM189A1O60320 539 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 MSCO60682 206 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 POTEJP0CG39 1038 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 MAN1A1P33908 653 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 EFNA5P52803 228 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 AP3M2P53677 418 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 GRM1Q13255 1194 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 MAMLD1Q13495 774 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 PPP1R2P3Q6NXS1 205 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 NCAPG2Q86XI2 1143 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 BRSK2Q8IWQ3 736 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 UBR7Q8N806 425 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 PRPF31Q8WWY3 499 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 HERPUD2Q9BSE4 406 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 TMEM109Q9BVC6 243 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 PPANQ9NQ55 473 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 CHST7Q9NS84 486 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 WHRNQ9P202 907 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 PPME1Q9Y570 386 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 GMNCA6NCL1 334 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 RIPK2O43353 540 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 PSTPIP1O43586 416 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 TRAPPC3O43617 180 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 HARSP12081 509 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 ZNF132P52740 706 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 IRX3P78415 501 aaPredicted RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 KRT17Q04695 432 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 C1QBPQ07021 282 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 MKRN3Q13064 507 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 CALCOCO2Q13137 446 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 SNX1Q13596 522 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 SCARA3Q6AZY7 606 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 DLK2Q6UY11 383 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 SYDE1Q6ZW31 735 aaPredicted RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 CROCCP2Q86T23 111 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 WDR49Q8IV35 697 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 C3orf20Q8ND61 904 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 FAM167AQ96KS9 214 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 ATXN2Q99700 1313 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 MRPL4Q9BYD3 311 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 CCDC113Q9H0I3 377 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 CNOT10Q9H9A5 744 aaKnown RBP10.73□□□□□ -0.69
VPS53-220ENST00000576149 SCINQ9Y6U3 715 aa10.73□□□□□ -0.69
VPS53-220ENST00000576149 A0A087WUV0 522 aaPredicted RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 THAP12O43422 761 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 TOM1L1O75674 476 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 ASS1P00966 412 aaKnown RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 CST3P01034 146 aaPredicted RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 FGFR4P22455 802 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 TNFSF9P41273 254 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 ADCY2Q08462 1091 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 KLF1Q13351 362 aaPredicted RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 LY6KQ17RY6 165 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 ZNF568Q3ZCX4 644 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 C6orf118Q5T5N4 469 aa10.72□□□□□ -0.69
VPS53-220ENST00000576149 UBAP2Q5T6F2 1119 aaKnown RBP10.72□□□□□ -0.69
VPS53-220ENST00000576149 IER5Q5VY09 327 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms