RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 RBM43Q6ZSC3 357 aaKnown RBP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 ANKS3Q6ZW76 656 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 ZC3H3Q8IXZ2 948 aaKnown RBP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 EFCAB13Q8IY85 973 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 FAM186BQ8IYM0 893 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 ZSWIM2Q8NEG5 633 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 PARD3BQ8TEW8 1205 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 PIK3R5Q8WYR1 880 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 CCDC127Q96BQ5 260 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 SUSD3Q96L08 255 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 CEP63Q96MT8 703 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 CGRRF1Q99675 332 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 OXCT2Q9BYC2 517 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 GPR62Q9BZJ7 368 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 RXFP1Q9HBX9 757 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 METTL14Q9HCE5 456 aaKnown RBP10.33□□□□□ -0.76
CCDC40-214ENST00000575431 FNIP2Q9P278 1114 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 DPP7Q9UHL4 492 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 RWDD2AQ9UIY3 292 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 COG5Q9UP83 839 aa10.33□□□□□ -0.76
CCDC40-214ENST00000575431 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 H7C4K7 107 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 M0QZQ0 153 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 TULP1O00294 542 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 SLC16A3O15427 465 aaKnown RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 LILRB3O75022 631 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 AKAP3O75969 853 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 GNA14O95837 355 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 ADH1AP07327 375 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 CD44P16070 742 aaKnown RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 ERCC5P28715 1186 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 GTF2H1P32780 548 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 CA8P35219 290 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 BRCC3P46736 316 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 CASP4P49662 377 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 NDUFV1P49821 464 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 VAMP7P51809 220 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 NLRP12P59046 1061 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 MYO1EQ12965 1108 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 PTPN14Q15678 1187 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 DUSP6Q16828 381 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 KLHL40Q2TBA0 621 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 SKOR2Q2VWA4 1001 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 PLPP4Q5VZY2 271 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 KLHL10Q6JEL2 608 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 SASS6Q6UVJ0 657 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 CD300LGQ6UXG3 332 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 DSTYKQ6XUX3 929 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 TRAPPC11Q7Z392 1133 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 FILIP1Q7Z7B0 1213 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 CEP57Q86XR8 500 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 MICALL1Q8N3F8 863 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 CSGALNACT2Q8N6G5 542 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 EFHBQ8N7U6 833 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 C3orf58Q8NDZ4 430 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 HASPINQ8TF76 798 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 NELFBQ8WX92 580 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 RIN2Q8WYP3 895 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 RABGGTAQ92696 567 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 PABPC5Q96DU9 382 aaKnown RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 VN1R3Q9BXE9 311 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 DSEQ9UL01 958 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 PCDHB8Q9UN66 801 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 BACE2Q9Y5Z0 518 aa10.32□□□□□ -0.76
CCDC40-214ENST00000575431 RANBP2P49792 3224 aaKnown RBP10.32□□□□□ -0.76
CCDC40-214ENST00000575431 MYO9BQ13459 2157 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 HIDE1A8MVS5 230 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 KPNA7A9QM74 516 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 F8W810 466 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 PHACTR2O75167 634 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 LETM1O95202 739 aaPredicted RBP10.31□□□□□ -0.76
CCDC40-214ENST00000575431 STAU1O95793 577 aaKnown RBP10.31□□□□□ -0.76
CCDC40-214ENST00000575431 ITGB3P05106 788 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 KRT19P08727 400 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 FAM163BP0C2L3 166 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 ODC1P11926 461 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 PRKCSHP14314 528 aaPredicted RBP10.31□□□□□ -0.76
CCDC40-214ENST00000575431 TYMPP19971 482 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 POLR2BP30876 1174 aaKnown RBP10.31□□□□□ -0.76
CCDC40-214ENST00000575431 ATICP31939 592 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 NRIP1P48552 1158 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 WNT7BP56706 349 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 BFSP1Q12934 665 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 TRPC3Q13507 836 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 COL19A1Q14993 1142 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 SKIV2LQ15477 1246 aaKnown RBP10.31□□□□□ -0.76
CCDC40-214ENST00000575431 CCDC85BQ15834 202 aaPredicted RBP10.31□□□□□ -0.76
CCDC40-214ENST00000575431 PSMD5Q16401 504 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 AAK1Q2M2I8 961 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 RTP2Q5QGT7 225 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 TTI2Q6NXR4 508 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 TMEM184AQ6ZMB5 413 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 DPH6Q7L8W6 267 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 FRMD5Q7Z6J6 570 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 C1orf127Q8N9H9 656 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 LNX1Q8TBB1 728 aaPredicted RBP10.31□□□□□ -0.76
CCDC40-214ENST00000575431 SPATA18Q8TC71 538 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 CASP10Q92851 521 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 KLHL5Q96PQ7 755 aa10.31□□□□□ -0.76
CCDC40-214ENST00000575431 MTMR12Q9C0I1 747 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms